ModCRE DB

Transcription factor

Q9NUA8 - ZBTB40

Zinc finger and BTB domain-containing protein 40

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1239 aa

11 Generated PWM 13 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00640_2.00 NN 70-40% CisBP TGTGTGTG 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9NUA8_ZBT40_HUMAN:723:787_3cbb_B_1 ModCRE Homology model TACGGGAATGTGACAATCGT Region 723-787 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:738:784_5yj3_C_1 ModCRE Homology model AAATC Region 738-784 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1028_5v3j_E_1 ModCRE Homology model ACGGGGGGTCCGGGCCCCCCCCC Region 806-1028 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1028_5v3m_C_1 ModCRE Homology model ATGAGCCTTTGGCCGCCCCAGGGT Region 806-1028 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1093_5wjq_D_1 ModCRE Homology model CGGCGGGGCGGGCGAGGGGCCCCGTGAC Region 806-1093 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:873:1028_2i13_A_1 ModCRE Homology model AGGGTTCTACTACTAGCTAAA Region 873-1028 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:947:1028_1p47_A_1 ModCRE Homology model GGGTCATTTCCGGGGT Region 947-1028 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:947:1028_4r2d_A_1 ModCRE Homology model GCCGGGACCC Region 947-1028 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:947:1028_4x9j_A_1 ModCRE Homology model GCGGGGAACT Region 947-1028 · 1 3D model Open · Scan
TFS_sp_Q9NUA8_ZBT40_HUMAN:950:1028_2kmk_A_1 ModCRE Homology model GGGGCAGGAGCAGCAT Region 950-1028 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1239 aa
723-787
806-1122

Region 723-787 2 PWM

Residues
65 aa
Domains
No overlapping PFAM annotation recorded
3D models
2 active PDBs
Templates
3CBB, 5YJ3
Sources
Predicted = Low
Scan this region Show models

Region 806-1122 8 PWM

Residues
317 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 1P47, 2I13, 2KMK, 4R2D, 4X9J, 5V3J, 5V3M, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
13 active PDB models 6 summary rows
Region 723-7872 models
Actions
Predicted = Low DIMER_sp_Q9NUA8_ZBT40_HUMAN:723:787_3cbb_B_1 3cbb 723-787 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:738:784_5yj3_C_1 5yj3 738-784 View model · PDB
Region 806-112211 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9NUA8_ZBT40_HUMAN:891:944_1llm_C_1 1llm 891-944 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1028_5v3j_E_1 5v3j 806-1028 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1028_5v3m_C_1 5v3m 806-1028 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1093_5wjq_D_1 5wjq 806-1093 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:809:1122_7w1m_H_1 7w1m 809-1122 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:873:1028_2i13_A_1 2i13 873-1028 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:947:1028_1p47_A_1 1p47 947-1028 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:947:1028_4r2d_A_1 4r2d 947-1028 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:947:1028_4x9j_A_1 4x9j 947-1028 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:949:1122_5yef_B_1 5yef 949-1122 View model · PDB
Predicted = Low TFS_sp_Q9NUA8_ZBT40_HUMAN:950:1028_2kmk_A_1 2kmk 950-1028 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 2i13 803:1122 873 1028 P:A · DNA:C,D 40.4% / 51.9% 100 View · PDB TFS_sp_Q9NUA8_ZBT40_HUMAN:873:1028_2i13_A_1
1 1llm 803:1122 891,891 944,944 P:C,D · DNA:A,B 37.0% / 59.3% 62,63 View · PDB DIMER_sp_Q9NUA8_ZBT40_HUMAN:891:944_1llm_C_1
2 5v3m 803:1122 806 1028 P:C · DNA:A,B 35.4% / 52.0% 79 View · PDB TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1028_5v3m_C_1
3 5v3j 803:1122 806 1028 P:E · DNA:A,B 35.4% / 52.0% 79 View · PDB TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1028_5v3j_E_1
1 5wjq 803:1122 806 1093 P:D · DNA:A,B 33.3% / 48.3% 96 View · PDB TFS_sp_Q9NUA8_ZBT40_HUMAN:806:1093_5wjq_D_1
4 7w1m 803:1122 809 1122 P:H · DNA:F,G 28.3% / 41.7% 92 View · PDB TFS_sp_Q9NUA8_ZBT40_HUMAN:809:1122_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
17-114PF00651BTB/POZ domainNo overlap with loaded model regions
836-858PF00096Zinc finger, C2H2 typeoverlaps 806-1122
893-915PF00096Zinc finger, C2H2 typeoverlaps 806-1122
921-944PF00096Zinc finger, C2H2 typeoverlaps 806-1122
978-1000PF00096Zinc finger, C2H2 typeoverlaps 806-1122
1137-1156PF12874Zinc-finger of C2H2 typeNo overlap with loaded model regions