ModCRE DB

Transcription factor

Q9NV05

cDNA FLJ11015 fis, clone PLACE1003302, highly similar to ZINC FINGER PROTEIN 83

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 488 aa

115 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)111
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 69.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.9% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.5% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 63.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 63.1% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 62.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.1% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 61.2% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 61.1% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 60.9% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 60.6% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.4% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 60.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 59.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 59.4% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 59.4% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 59.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 59.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 58.9% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 58.8% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 58.7% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 58.5% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 58.5% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 58.4% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 58.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.5% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 57.4% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 57.3% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.3% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 57.2% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 57.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 57.1% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 57.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 57.1% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 57.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.8% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 56.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.3% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.2% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 56.2% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 56.2% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 56.2% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 56.0% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 55.8% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 55.3% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 55.1% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 55.1% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 55.1% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 54.5% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 54.4% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 54.4% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 54.4% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 54.4% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.3% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 54.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.8% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 53.6% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 53.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 53.3% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.2% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 53.2% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.1% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 53.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.8% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 52.7% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.6% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.5% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 52.3% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.2% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 52.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.1% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 52.1% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 52.0% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 51.9% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 51.9% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.7% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 51.6% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.5% identity Open · Scan
M07575_2.00 NN 70-40% CisBP TCTCCAAGGCGGCCAGCA 51.5% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 51.5% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.1% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.7% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 50.6% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.3% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.3% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.3% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.2% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.1% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.1% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.1% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M01457_2.00 NN 70-40% CisBP GCGCACGGAC 50.0% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 50.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q9NV05_Q9NV05_HUMAN:130:283_2i13_A_1 ModCRE Homology model ACTCAGAGGCAAGTACTTCAA Region 130-283 · 1 3D model Open · Scan
TFS_tr_Q9NV05_Q9NV05_HUMAN:148:424_5v3j_E_1 ModCRE Homology model TCCGAGGCCTCCCCCCTTGGGGCCGG Region 148-424 · 1 3D model Open · Scan
TFS_tr_Q9NV05_Q9NV05_HUMAN:148:424_5v3m_C_1 ModCRE Homology model CCCCCCCCCCTCCCCCCCTCTGGGGC Region 148-424 · 1 3D model Open · Scan
TFS_tr_Q9NV05_Q9NV05_HUMAN:174:452_5wjq_D_1 ModCRE Homology model ACCCCCTTCCCCGCCCCACCGGGGGCCC Region 174-452 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 488 aa
121-452

Region 121-452 4 PWM

Residues
332 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 121-4526 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q9NV05_Q9NV05_HUMAN:287:360_1llm_C_1 1llm 287-360 View model · PDB
Predicted = Low TFS_tr_Q9NV05_Q9NV05_HUMAN:121:419_7w1m_H_1 7w1m 121-419 View model · PDB
Predicted = Low TFS_tr_Q9NV05_Q9NV05_HUMAN:130:283_2i13_A_1 2i13 130-283 View model · PDB
Predicted = Low TFS_tr_Q9NV05_Q9NV05_HUMAN:148:424_5v3j_E_1 5v3j 148-424 View model · PDB
Predicted = Low TFS_tr_Q9NV05_Q9NV05_HUMAN:148:424_5v3m_C_1 5v3m 148-424 View model · PDB
Predicted = Low TFS_tr_Q9NV05_Q9NV05_HUMAN:174:452_5wjq_D_1 5wjq 174-452 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 2i13 95:454 130 283 P:A · DNA:C,D 57.8% / 68.8% 100 View · PDB TFS_tr_Q9NV05_Q9NV05_HUMAN:130:283_2i13_A_1
1 5wjq 95:454 174 452 P:D · DNA:A,B 54.1% / 68.5% 99 View · PDB TFS_tr_Q9NV05_Q9NV05_HUMAN:174:452_5wjq_D_1
2 5v3m 95:454 148 424 P:C · DNA:A,B 53.4% / 69.0% 100 View · PDB TFS_tr_Q9NV05_Q9NV05_HUMAN:148:424_5v3m_C_1
3 5v3j 95:454 148 424 P:E · DNA:A,B 53.4% / 69.0% 100 View · PDB TFS_tr_Q9NV05_Q9NV05_HUMAN:148:424_5v3j_E_1
1 1llm 95:454 287,287 360,360 P:C,D · DNA:A,B 37.8% / 55.4% 83,85 View · PDB DIMER_tr_Q9NV05_Q9NV05_HUMAN:287:360_1llm_C_1
4 7w1m 95:454 121 419 P:H · DNA:F,G 37.3% / 52.9% 92 View · PDB TFS_tr_Q9NV05_Q9NV05_HUMAN:121:419_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
121-143PF00096Zinc finger, C2H2 typeoverlaps 121-452
149-171PF00096Zinc finger, C2H2 typeoverlaps 121-452
177-199PF00096Zinc finger, C2H2 typeoverlaps 121-452
205-227PF00096Zinc finger, C2H2 typeoverlaps 121-452
233-255PF00096Zinc finger, C2H2 typeoverlaps 121-452
261-283PF00096Zinc finger, C2H2 typeoverlaps 121-452
289-311PF00096Zinc finger, C2H2 typeoverlaps 121-452
317-339PF00096Zinc finger, C2H2 typeoverlaps 121-452
345-367PF00096Zinc finger, C2H2 typeoverlaps 121-452
373-395PF00096Zinc finger, C2H2 typeoverlaps 121-452
401-423PF00096Zinc finger, C2H2 typeoverlaps 121-452
429-451PF00096Zinc finger, C2H2 typeoverlaps 121-452
457-479PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions