Region 37-103 5 PWM
- Residues
- 67 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 1J5N, 3TMM, 4QR9, 7LBX
- Sources
- Predicted = Low
Transcription factor
Q9NVM2
PB1 protein (cDNA FLJ10645 fis, clone NT2RP2005767, moderately similar to G.gallus PB1 gene)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 306 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_Q9NVM2_Q9NVM2_HUMAN:37:101_1j5n_A_1 | ModCRE | Homology model | CTGAACAACACTTTT | Region 37-101 · 1 3D model | Open · Scan | |
| TFS_tr_Q9NVM2_Q9NVM2_HUMAN:48:103_4qr9_A_1 | ModCRE | Homology model | ATAGGCTC | Region 48-103 · 1 3D model | Open · Scan | |
| TFS_tr_Q9NVM2_Q9NVM2_HUMAN:48:103_4qr9_B_1 | ModCRE | Homology model | CGTTTG | Region 48-103 · 1 3D model | Open · Scan | |
| TFS_tr_Q9NVM2_Q9NVM2_HUMAN:55:101_3tmm_A_1 | ModCRE | Homology model | TGCGGCATGTGTAGGGC | Region 55-101 · 1 3D model | Open · Scan | |
| TFS_tr_Q9NVM2_Q9NVM2_HUMAN:55:101_7lbx_B_1 | ModCRE | Homology model | GCATGTGCAGGCC | Region 55-101 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
306 aa
37-103
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 37-1035 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_Q9NVM2_Q9NVM2_HUMAN:37:101_1j5n_A_1 | 1j5n | 37-101 | View model · PDB |
| Predicted = Low | TFS_tr_Q9NVM2_Q9NVM2_HUMAN:48:103_4qr9_A_1 | 4qr9 | 48-103 | View model · PDB |
| Predicted = Low | TFS_tr_Q9NVM2_Q9NVM2_HUMAN:48:103_4qr9_B_1 | 4qr9 | 48-103 | View model · PDB |
| Predicted = Low | TFS_tr_Q9NVM2_Q9NVM2_HUMAN:55:101_3tmm_A_1 | 3tmm | 55-101 | View model · PDB |
| Predicted = Low | TFS_tr_Q9NVM2_Q9NVM2_HUMAN:55:101_7lbx_B_1 | 7lbx | 55-101 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 4 | 7lbx | 37:103 | 55 | 101 | P:B · DNA:C,D,E,F | 40.4% / 55.3% | 24 | View · PDB TFS_tr_Q9NVM2_Q9NVM2_HUMAN:55:101_7lbx_B_1 |
| 5 | 3tmm | 37:103 | 55 | 101 | P:A · DNA:B,C | 40.4% / 55.3% | 24 | View · PDB TFS_tr_Q9NVM2_Q9NVM2_HUMAN:55:101_3tmm_A_1 |
| 2 | 4qr9 | 37:103 | 48 | 103 | P:B · DNA:C,D,E,F | 34.5% / 48.3% | 74 | View · PDB TFS_tr_Q9NVM2_Q9NVM2_HUMAN:48:103_4qr9_B_1 |
| 3 | 4qr9 | 37:103 | 48 | 103 | P:A · DNA:C,D,E,F | 34.5% / 48.3% | 74 | View · PDB TFS_tr_Q9NVM2_Q9NVM2_HUMAN:48:103_4qr9_A_1 |
| 1 | 1j5n | 37:103 | 37 | 101 | P:A · DNA:B,C | 30.8% / 61.5% | 69 | View · PDB TFS_tr_Q9NVM2_Q9NVM2_HUMAN:37:101_1j5n_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 54-102 | PF00505 | HMG (high mobility group) box | overlaps 37-103 |