ModCRE DB

Transcription factor

Q9NYD6 - HOXC10

Homeobox protein Hox-C10 (Homeobox protein Hox-3I)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 342 aa

13 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known13
MotifPredictionSourceDNA bindingSupportLogoActions
MA0905.1 Known JASPAR GTCGTAAAAT Direct PWM Open · Scan
MA0905.2 Known JASPAR GTCGTAAAA Direct PWM Open · Scan
M03228_2.00 Known CisBP TTTTTATGGG Direct PWM Open · Scan
M03229_2.00 Known CisBP TTTTTATTAC Direct PWM Open · Scan
M03230_2.00 Known CisBP ATTTTACGAC Direct PWM Open · Scan
M05335_2.00 Known CisBP GTTTTATTGCC Direct PWM Open · Scan
M05336_2.00 Known CisBP GGTCGTAAAAC Direct PWM Open · Scan
M05337_2.00 Known CisBP GTTTTATTACC Direct PWM Open · Scan
M05338_2.00 Known CisBP GGTCGTAAAAC Direct PWM Open · Scan
M05339_2.00 Known CisBP GTTTTATTACC Direct PWM Open · Scan
M05340_2.00 Known CisBP GGTCGTAAAAC Direct PWM Open · Scan
M05341_2.00 Known CisBP GTTTTATTACC Direct PWM Open · Scan
M05342_2.00 Known CisBP GGTCGTAAAAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 342 aa
262-325

Region 262-325 0 PWM

Residues
64 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 262-3251 model
Actions
Predicted = Low DIMER_Q9NYD6:262:325_5zjq_A_1 5zjq 262-325 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
269-325PF00046Homeodomainoverlaps 262-325