Transcription factor

Q9NZ00

C2H2-type zinc finger protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 145 aa

138 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)133

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00619_2.00	NN 70-40%	CisBP	TAAATCACGG	68.9% identity		Open · Scan
M04524_2.00	NN 70-40%	CisBP	TAAATCACTGCATTTCACTCA	68.9% identity		Open · Scan
M07706_2.00	NN 70-40%	CisBP	GTCTTTGAGAGGGCCCAGATGTTGGACTTA	66.8% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	65.8% identity		Open · Scan
M08279_2.00	NN 70-40%	CisBP	CCTCCCTCC	65.5% identity		Open · Scan
MA1587.1	NN 70-40%	JASPAR	CCTCGACCTCCTGA	64.8% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	64.7% identity		Open · Scan
M07598_2.00	NN 70-40%	CisBP	CTGACAATACCAAGTGTTGAC	63.6% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	63.5% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	63.5% identity		Open · Scan
M07658_2.00	NN 70-40%	CisBP	CCGCCGCAGCCGCCG	63.4% identity		Open · Scan
M08252_2.00	NN 70-40%	CisBP	CCGGCTCCAGCACCC	63.4% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	63.4% identity		Open · Scan
M08944_2.00	NN 70-40%	CisBP	TACCATGCTGTTTTGATTAC	63.4% identity		Open · Scan
M08255_2.00	NN 70-40%	CisBP	CTCTTCCGGT	63.1% identity		Open · Scan
M07700_2.00	NN 70-40%	CisBP	ATGTTGTGAGGAAGCCCA	62.7% identity		Open · Scan
M08247_2.00	NN 70-40%	CisBP	AAAAATAACAAACGG	62.7% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	62.7% identity		Open · Scan
M08371_2.00	NN 70-40%	CisBP	CCAGACTTGTCCTCT	62.7% identity		Open · Scan
M08985_2.00	NN 70-40%	CisBP	TGAGGACCTACTGTGTGCC	62.7% identity		Open · Scan
MA1594.1	NN 70-40%	JASPAR	AGGGGACATCACTACAGATCCCAC	62.7% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	62.5% identity		Open · Scan
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	62.3% identity		Open · Scan
M07610_2.00	NN 70-40%	CisBP	CCTTCTTCCTCCCCCCTGCCCACC	62.0% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	62.0% identity		Open · Scan
M07689_2.00	NN 70-40%	CisBP	ACCCAGGCTCCTTCCATCTTGTGGCTC	62.0% identity		Open · Scan
M07714_2.00	NN 70-40%	CisBP	AGCCCATTGGGGCCTATGCCC	62.0% identity		Open · Scan
M08375_2.00	NN 70-40%	CisBP	TTCCCCATTGGCTACTGCACCGGTCCT	62.0% identity		Open · Scan
M08935_2.00	NN 70-40%	CisBP	CCTCCTCCCTCAGACC	62.0% identity		Open · Scan
M07579_2.00	NN 70-40%	CisBP	CATCTCCAGGA	61.3% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	61.3% identity		Open · Scan
M07699_2.00	NN 70-40%	CisBP	GGTTTAT	61.3% identity		Open · Scan
M08365_2.00	NN 70-40%	CisBP	GCCAGCAGCCATCAG	61.3% identity		Open · Scan
M08914_2.00	NN 70-40%	CisBP	ATTTAGTCCATTTACATTTAATGT	61.3% identity		Open · Scan
M08917_2.00	NN 70-40%	CisBP	GCTGAGCCATGTGGGGTGCT	61.3% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	61.1% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	61.1% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	61.1% identity		Open · Scan
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	61.1% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	61.1% identity		Open · Scan
M07581_2.00	NN 70-40%	CisBP	TCCCCTGTGCTTCTCTCCCCT	60.6% identity		Open · Scan
M07753_2.00	NN 70-40%	CisBP	TGCATTCCTTGGCTTGTG	60.6% identity		Open · Scan
M08335_2.00	NN 70-40%	CisBP	AGTCGTTGTCTG	60.6% identity		Open · Scan
M08347_2.00	NN 70-40%	CisBP	GCCCTGGGCAGC	60.6% identity		Open · Scan
M08934_2.00	NN 70-40%	CisBP	GCTGTACCTGCTTATTAGGC	60.5% identity		Open · Scan
M04653_2.00	NN 70-40%	CisBP	GGTACGGTTGTCCATGTTGCAA	60.3% identity		Open · Scan
M07590_2.00	NN 70-40%	CisBP	TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT	60.1% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	60.0% identity		Open · Scan
M05853_2.00	NN 70-40%	CisBP	CCACCTTTAGCCATATCT	60.0% identity		Open · Scan
M07678_2.00	NN 70-40%	CisBP	CCCGCCCCCTCCTCCCCCTTCCCACCC	60.0% identity		Open · Scan
M07764_2.00	NN 70-40%	CisBP	CTGCACTCTCCCCTTCCCCCCCTCCCC	60.0% identity		Open · Scan
M07777_2.00	NN 70-40%	CisBP	GCCAATTTCCGTGGTGTAAAT	60.0% identity		Open · Scan
M08339_2.00	NN 70-40%	CisBP	CTCGAACCCGGGACC	60.0% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	59.4% identity		Open · Scan
M07740_2.00	NN 70-40%	CisBP	TCCTGATTCCACACTCAAACATAACTTT	59.3% identity		Open · Scan
M08256_2.00	NN 70-40%	CisBP	GTGCCTT	59.3% identity		Open · Scan
M08309_2.00	NN 70-40%	CisBP	AAAAACCCCCCTGCAGAGCCCAGCCCT	59.3% identity		Open · Scan
M00764_2.00	NN 70-40%	CisBP	GTCTACAC	58.6% identity		Open · Scan
M04650_2.00	NN 70-40%	CisBP	GCATAACTGCCCCGCTGCC	58.6% identity		Open · Scan
M06108_2.00	NN 70-40%	CisBP	ACAACAACAAC	58.6% identity		Open · Scan
M07593_2.00	NN 70-40%	CisBP	AGATGAAGTCACCCCTCTTAC	58.6% identity		Open · Scan
M07648_2.00	NN 70-40%	CisBP	GCTTGCAAAAAAAATTTAACTCCCAGCTC	58.6% identity		Open · Scan
M07667_2.00	NN 70-40%	CisBP	CCGCACAGGCCCCCGGGCCCC	58.6% identity		Open · Scan
M07707_2.00	NN 70-40%	CisBP	TCCCGC	58.6% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	58.6% identity		Open · Scan
M08860_2.00	NN 70-40%	CisBP	TCTTATAAGGGCACTAATCCCATT	58.6% identity		Open · Scan
M07686_2.00	NN 70-40%	CisBP	TAGCTTGTTTCCAGCCAC	58.3% identity		Open · Scan
M02924_2.00	NN 70-40%	CisBP	AGTGTTAACAGAACACCT	58.0% identity		Open · Scan
M08291_2.00	NN 70-40%	CisBP	AATCCAGCCCTAGACTCTCCC	58.0% identity		Open · Scan
M04621_2.00	NN 70-40%	CisBP	AGCAATTCCGCTCA	57.9% identity		Open · Scan
M07729_2.00	NN 70-40%	CisBP	CCAGACTGCCTGCCAAAACCCCCT	57.9% identity		Open · Scan
MA1589.1	NN 70-40%	JASPAR	TAGGAGTGGAATTGCTGGGTC	57.9% identity		Open · Scan
M08342_2.00	NN 70-40%	CisBP	GCTCTGCCTCCCTCT	57.6% identity		Open · Scan
M07660_2.00	NN 70-40%	CisBP	CCGCGCCTACCTGAGGGCGCGGGCCTGGGG	57.2% identity		Open · Scan
M08373_2.00	NN 70-40%	CisBP	CCCCCTGGCTCTTCCTCT	57.2% identity		Open · Scan
M08392_2.00	NN 70-40%	CisBP	CTTCACCTGCTGAGG	57.2% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	57.2% identity		Open · Scan
M07762_2.00	NN 70-40%	CisBP	GCCGCGCACAGGCTTCTAGCC	56.9% identity		Open · Scan
M08357_2.00	NN 70-40%	CisBP	GAGCCTGCTACTGAGCCTGGG	56.9% identity		Open · Scan
M00149_2.00	NN 70-40%	CisBP	CGTACGCC	56.6% identity		Open · Scan
MA1602.1	NN 70-40%	JASPAR	CGTCTACACGGG	56.6% identity		Open · Scan
M07601_2.00	NN 70-40%	CisBP	CAGATGCCGGCACCATGCTTC	56.5% identity		Open · Scan
M07712_2.00	NN 70-40%	CisBP	ACATTTTTTTAATCTAAAAAAACATTTACA	56.5% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	55.8% identity		Open · Scan
M07587_2.00	NN 70-40%	CisBP	CCCCCTCCCCAGTCGAGCCCCCGC	55.8% identity		Open · Scan
M07684_2.00	NN 70-40%	CisBP	CCTGTTCTTGACTTT	55.8% identity		Open · Scan
M07761_2.00	NN 70-40%	CisBP	CTGATTATTCACCCA	55.8% identity		Open · Scan
M08292_2.00	NN 70-40%	CisBP	TGTATTCCTTGTCATGTGTGG	55.8% identity		Open · Scan
M08311_2.00	NN 70-40%	CisBP	CTGGAACAGAAGGGGCGA	55.8% identity		Open · Scan
M08399_2.00	NN 70-40%	CisBP	TACTCTGGGGCCACATGACTC	55.8% identity		Open · Scan
M07567_2.00	NN 70-40%	CisBP	CCACTCCACTCA	55.5% identity		Open · Scan
M02896_2.00	NN 70-40%	CisBP	TGCTTTCTAGGAATTCA	55.1% identity		Open · Scan
M07562_2.00	NN 70-40%	CisBP	GAAAAAAAC	55.1% identity		Open · Scan
M07746_2.00	NN 70-40%	CisBP	CAGCTGGCGCCCAACATGGGTCCC	55.1% identity		Open · Scan
M08254_2.00	NN 70-40%	CisBP	CTGCCCTGGGACTTT	55.1% identity		Open · Scan
M07588_2.00	NN 70-40%	CisBP	TCCTTCCCTCTTTCC	54.9% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	54.8% identity		Open · Scan
M08300_2.00	NN 70-40%	CisBP	CTGCCCAATTCAT	54.8% identity		Open · Scan
M08386_2.00	NN 70-40%	CisBP	GCCTTAAAAGCTCAGCAC	54.8% identity		Open · Scan
MA0056.1	NN 70-40%	JASPAR	TGGGGA	54.4% identity		Open · Scan
M04598_2.00	NN 70-40%	CisBP	CGCTAACTCTCCACA	53.9% identity		Open · Scan
M07693_2.00	NN 70-40%	CisBP	CTCCTGTGTGTGCCTTGGCTG	53.7% identity		Open · Scan
M07717_2.00	NN 70-40%	CisBP	GGCTCCGCCCCC	53.7% identity		Open · Scan
MA0528.1	NN 70-40%	JASPAR	GGAGGAGGAGGGGGAGGAGGA	53.4% identity		Open · Scan
MA1124.1	NN 70-40%	JASPAR	CATTCATTCATTC	53.2% identity		Open · Scan
M07645_2.00	NN 70-40%	CisBP	CTCCTT	53.1% identity		Open · Scan
M07691_2.00	NN 70-40%	CisBP	CCTGCAGCCACCTTGGCCTTG	53.1% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	53.1% identity		Open · Scan
MA1656.1	NN 70-40%	JASPAR	CCAAGCCCAACCAG	53.1% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	52.2% identity		Open · Scan
M04613_2.00	NN 70-40%	CisBP	CTCATGTGCTAATTACAAA	52.1% identity		Open · Scan
M00945_2.00	NN 70-40%	CisBP	CACCGCAC	51.7% identity		Open · Scan
M03711_2.00	NN 70-40%	CisBP	TTTTTTTTGCATTTTTT	51.7% identity		Open · Scan
M07566_2.00	NN 70-40%	CisBP	TCAAACCATCCTTGC	51.7% identity		Open · Scan
M07733_2.00	NN 70-40%	CisBP	TCTTTCTCTCTCTCC	51.7% identity		Open · Scan
MA0744.1	NN 70-40%	JASPAR	ATGCAACAGGTGG	51.7% identity		Open · Scan
M04465_2.00	NN 70-40%	CisBP	GTGATTCTTATCTTATCCTT	51.4% identity		Open · Scan
M06135_2.00	NN 70-40%	CisBP	CAGCCACGCCCACCT	51.3% identity		Open · Scan
MA1652.1	NN 70-40%	JASPAR	GGAGGAGGTGAGAA	51.3% identity		Open · Scan
M00142_2.00	NN 70-40%	CisBP	GTGCTCCT	51.0% identity		Open · Scan
M04611_2.00	NN 70-40%	CisBP	CTTTCGGACAC	50.8% identity		Open · Scan
M00786_2.00	NN 70-40%	CisBP	TATATATAT	50.3% identity		Open · Scan
M04536_2.00	NN 70-40%	CisBP	ACGTAACCCGATACC	50.3% identity		Open · Scan
M07623_2.00	NN 70-40%	CisBP	GTCTAATAGAGCTGGGCTGCA	50.3% identity		Open · Scan
M08367_2.00	NN 70-40%	CisBP	GGGGTGATGACCACTCTGGCTTCTTAC	50.3% identity		Open · Scan
M04475_2.00	NN 70-40%	CisBP	GATGCACGTACCGTGCCTCA	50.0% identity		Open · Scan
M04505_2.00	NN 70-40%	CisBP	AGCTTTTCCCACAC	50.0% identity		Open · Scan
M05859_2.00	NN 70-40%	CisBP	GGCCACGCCCACT	50.0% identity		Open · Scan
M07650_2.00	NN 70-40%	CisBP	GGTCTATAAAAGGGGGGCCGCGGGGGGG	50.0% identity		Open · Scan
M07683_2.00	NN 70-40%	CisBP	GTGGGAAAGCCT	50.0% identity		Open · Scan
M08901_2.00	NN 70-40%	CisBP	CCAGTTCACACC	50.0% identity		Open · Scan
MA0685.1	NN 70-40%	JASPAR	TAAGCCACGCCCCCTTT	50.0% identity		Open · Scan
MA1601.1	NN 70-40%	JASPAR	ATGTGGGAAA	50.0% identity		Open · Scan

ModCRE5

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
DIMER_tr_Q9NZ00_Q9NZ00_HUMAN:32:81_1llm_D_1	ModCRE	Homology model	CCCGCGCGCGGG	Region 32-81 · 1 3D model		Open · Scan
TFS_tr_Q9NZ00_Q9NZ00_HUMAN:11:112_2jp9_A_1	ModCRE	Homology model	ACGGGGGGGGGGCCCAG	Region 11-112 · 1 3D model		Open · Scan
TFS_tr_Q9NZ00_Q9NZ00_HUMAN:31:141_5egb_A_1	ModCRE	Homology model	CGGGGACGGGGGGGGGGG	Region 31-141 · 1 3D model		Open · Scan
TFS_tr_Q9NZ00_Q9NZ00_HUMAN:33:141_5eh2_F_1	ModCRE	Homology model	GGCCGGGGGGGGGGCCCGA	Region 33-141 · 1 3D model		Open · Scan
TFS_tr_Q9NZ00_Q9NZ00_HUMAN:3:85_4x9j_A_1	ModCRE	Homology model	GAGCGCGCCG	Region 3-85 · 1 3D model		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 145 aa

1-145

Region 1-145 5 PWM

Residues

145 aa

Domains

PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

10 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 2JP9, 4X9J, 5EGB, 5EH2, 5EI9, 5V3J, ...

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

10 active PDB models 6 summary rows

Region 1-14510 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_tr_Q9NZ00_Q9NZ00_HUMAN:32:81_1llm_D_1	1llm	32-81	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:11:112_2jp9_A_1	2jp9	11-112	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:1:141_5v3j_E_1	5v3j	1-141	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:1:141_5v3m_C_1	5v3m	1-141	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:1:145_5wjq_D_1	5wjq	1-145	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:31:141_5egb_A_1	5egb	31-141	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:31:141_5ei9_E_1	5ei9	31-141	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:33:141_5eh2_F_1	5eh2	33-141	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:3:85_4x9j_A_1	4x9j	3-85	View model · PDB
Predicted = Low	TFS_tr_Q9NZ00_Q9NZ00_HUMAN:4:140_2i13_A_1	2i13	4-140	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
5	5ei9	1:145	31	141	P:E · DNA:A,B	62.2% / 68.5%	100	View · PDB TFS_tr_Q9NZ00_Q9NZ00_HUMAN:31:141_5ei9_E_1
1	2i13	1:145	4	140	P:A · DNA:C,D	58.4% / 70.8%	90	View · PDB TFS_tr_Q9NZ00_Q9NZ00_HUMAN:4:140_2i13_A_1
2	5wjq	1:145	1	145	P:D · DNA:A,B	56.6% / 70.3%	51	View · PDB TFS_tr_Q9NZ00_Q9NZ00_HUMAN:1:145_5wjq_D_1
3	5v3m	1:145	1	141	P:C · DNA:A,B	55.3% / 69.5%	50	View · PDB TFS_tr_Q9NZ00_Q9NZ00_HUMAN:1:141_5v3m_C_1
4	5v3j	1:145	1	141	P:E · DNA:A,B	55.3% / 69.5%	50	View · PDB TFS_tr_Q9NZ00_Q9NZ00_HUMAN:1:141_5v3j_E_1
1	1llm	1:145	32,32	81,81	P:C,D · DNA:A,B	48.0% / 64.0%	57,58	View · PDB DIMER_tr_Q9NZ00_Q9NZ00_HUMAN:32:81_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
21-45	PF13465	Zinc-finger double domain	overlaps 1-145
62-84	PF00096	Zinc finger, C2H2 type	overlaps 1-145
90-112	PF00096	Zinc finger, C2H2 type	overlaps 1-145
118-140	PF00096	Zinc finger, C2H2 type	overlaps 1-145