ModCRE DB

Transcription factor

Q9NZR4 - VSX1

Visual system homeobox 1 (Homeodomain protein RINX) (Retinal inner nuclear layer homeobox protein) (Transcription factor VSX1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 365 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known15
MotifPredictionSourceDNA bindingSupportLogoActions
MA0725.1 Known JASPAR CTAATTAT Direct PWM Open · Scan
MA0725.2 Known JASPAR CTAATTA Direct PWM Open · Scan
M00266_2.00 Known CisBP GCTAATTGG Direct PWM Open · Scan
M00267_2.00 Known CisBP GCTAATTAG Direct PWM Open · Scan
M00268_2.00 Known CisBP GATAATTGG Direct PWM Open · Scan
M00269_2.00 Known CisBP GCTAATTGG Direct PWM Open · Scan
M03087_2.00 Known CisBP CTAATTAT Direct PWM Open · Scan
M03088_2.00 Known CisBP GCTAATTAGCC Direct PWM Open · Scan
M04941_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M04942_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M04943_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M04944_2.00 Known CisBP GTAATTAG Direct PWM Open · Scan
M04945_2.00 Known CisBP CTAATTAG Direct PWM Open · Scan
M04946_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M05869_2.00 Known CisBP AGCTAATTAA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 365 aa
163-222

Region 163-222 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 163-2221 model
Actions
Predicted = Low DIMER_Q9NZR4:163:222_1fjl_A_1 1fjl 163-222 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
165-221PF00046Homeodomainoverlaps 163-222