ModCRE DB

Transcription factor

Q9NZV7 - ZIM2

Zinc finger imprinted 2 (Zinc finger protein 656)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 527 aa

14 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07779_2.00 Known CisBP CCATCCCCCCTCTTCTCCCGGCCTGTGGCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 52.6% identity Open · Scan
M01439_2.00 NN 70-40% CisBP TTACGCCACA 51.1% identity Open · Scan
M08955_2.00 NN 70-40% CisBP GATCCTCCCGCCTCAGCCTCCC 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9NZV7_ZIM2_HUMAN:328:527_5v3j_E_1 ModCRE Homology model TCGAGGAAACCCCTTTTA Region 328-527 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:328:527_5v3m_C_1 ModCRE Homology model GCGGGATGATCCCCAATTG Region 328-527 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:330:378_5yj3_C_1 ModCRE Homology model GCGCC Region 330-378 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:330:434_5ei9_E_1 ModCRE Homology model CCCCTGGTACCACCCCA Region 330-434 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:330:517_5wjq_D_1 ModCRE Homology model GTGCCCCCCCCAGCCCTTGCCCCGCCG Region 330-517 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:337:488_2i13_A_1 ModCRE Homology model AAAAAGAACCGCATGTATAAC Region 337-488 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:467:516_3uk3_C_1 ModCRE Homology model TAGGACAAATC Region 467-516 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:467:516_3uk3_D_1 ModCRE Homology model GATTTCCCTG Region 467-516 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:467:516_4is1_C_1 ModCRE Homology model TACGGAAATCC Region 467-516 · 1 3D model Open · Scan
TFS_sp_Q9NZV7_ZIM2_HUMAN:467:516_4is1_D_1 ModCRE Homology model GATGTGCCTG Region 467-516 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 527 aa
328-527

Region 328-527 10 PWM

Residues
200 aa
Domains
PF13894 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 3UK3, 4IS1, 5EI9, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 328-52711 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9NZV7_ZIM2_HUMAN:467:512_1llm_C_1 1llm 467-512 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:328:527_5v3j_E_1 5v3j 328-527 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:328:527_5v3m_C_1 5v3m 328-527 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:330:378_5yj3_C_1 5yj3 330-378 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:330:434_5ei9_E_1 5ei9 330-434 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:330:517_5wjq_D_1 5wjq 330-517 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:337:488_2i13_A_1 2i13 337-488 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:467:516_3uk3_C_1 3uk3 467-516 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:467:516_3uk3_D_1 3uk3 467-516 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:467:516_4is1_C_1 4is1 467-516 View model · PDB
Predicted = Low TFS_sp_Q9NZV7_ZIM2_HUMAN:467:516_4is1_D_1 4is1 467-516 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 324:527 467,467 512,512 P:C,D · DNA:A,B 45.7% / 60.9% 52,54 View · PDB DIMER_sp_Q9NZV7_ZIM2_HUMAN:467:512_1llm_C_1
5 5ei9 324:527 330 434 P:E · DNA:A,B 41.0% / 55.2% 94 View · PDB TFS_sp_Q9NZV7_ZIM2_HUMAN:330:434_5ei9_E_1
4 2i13 324:527 337 488 P:A · DNA:C,D 37.4% / 51.0% 98 View · PDB TFS_sp_Q9NZV7_ZIM2_HUMAN:337:488_2i13_A_1
1 5wjq 324:527 330 517 P:D · DNA:A,B 35.6% / 53.4% 66 View · PDB TFS_sp_Q9NZV7_ZIM2_HUMAN:330:517_5wjq_D_1
2 5v3m 324:527 328 527 P:C · DNA:A,B 34.5% / 53.7% 71 View · PDB TFS_sp_Q9NZV7_ZIM2_HUMAN:328:527_5v3m_C_1
3 5v3j 324:527 328 527 P:E · DNA:A,B 34.5% / 53.7% 71 View · PDB TFS_sp_Q9NZV7_ZIM2_HUMAN:328:527_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
175-216PF01352KRAB boxNo overlap with loaded model regions
329-350PF13894C2H2-type zinc fingeroverlaps 328-527
467-488PF00096Zinc finger, C2H2 typeoverlaps 328-527
494-516PF00096Zinc finger, C2H2 typeoverlaps 328-527