Region 164-208 0 PWM
- Residues
- 45 aa
- Domains
- PF02008 · CXXC zinc finger domain
- 3D models
- 1 active PDB
- Templates
- 5W9Q
- Sources
- Structure model
Transcription factor
Q9P0U4 - CXXC1
CXXC-type zinc finger protein 1 (CpG-binding protein) (PHD finger and CXXC domain-containing protein 1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 656 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M01910_2.00 | NN 70+% | CisBP | GCGGAAATT | 72.5% identity | Open · Scan |
Nearest Neighbor (70% - 40%)5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M01906_2.00 | NN 70-40% | CisBP | CGTACGTA | 65.0% identity | Open · Scan | |
| M01908_2.00 | NN 70-40% | CisBP | TTTGCGG | 61.3% identity | Open · Scan | |
| M01907_2.00 | NN 70-40% | CisBP | TTCGCGTAAACG | 60.0% identity | Open · Scan | |
| M01915_2.00 | NN 70-40% | CisBP | ATTACGTAAT | 60.0% identity | Open · Scan | |
| M01913_2.00 | NN 70-40% | CisBP | GGCAGCGGGG | 50.0% identity | Open · Scan |
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
656 aa
164-208
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 164-2081 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_Q9P0U4:164:208_5w9q_A_1 | 5w9q | 164-208 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 29-73 | PF00628 | PHD-finger | No overlap with loaded model regions |
| 163-208 | PF02008 | CXXC zinc finger domain | overlaps 164-208 |
| 400-636 | PF12269 | CpG binding protein C-terminal domain | No overlap with loaded model regions |