ModCRE DB

Transcription factor

Q9P215 - POGK

Pogo transposable element with KRAB domain

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 609 aa

34 Generated PWM 2 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)32
MotifPredictionSourceDNA bindingSupportLogoActions
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 59.6% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 58.9% identity Open · Scan
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 58.0% identity Open · Scan
M07757_2.00 NN 70-40% CisBP CCGCGGCC 56.6% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 55.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.2% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.2% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 53.8% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 53.8% identity Open · Scan
M07750_2.00 NN 70-40% CisBP CTTCTGACACCA 53.8% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 53.8% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 53.5% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 52.6% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 52.6% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 52.6% identity Open · Scan
M07701_2.00 NN 70-40% CisBP CCTGGGCTAGGCCCTGGC 52.6% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 52.6% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 52.6% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 52.6% identity Open · Scan
M07634_2.00 NN 70-40% CisBP AAACGTCCACG 51.9% identity Open · Scan
M07720_2.00 NN 70-40% CisBP TGTGTGTGTGGGCATGTGTGTGTGCGAGT 51.8% identity Open · Scan
M07758_2.00 NN 70-40% CisBP CGCCCTC 51.7% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.9% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 50.9% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 50.8% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.0% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 50.0% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 50.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 50.0% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 50.0% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 50.0% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 50.0% identity Open · Scan
ModCRE2
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9P215_POGK_HUMAN:195:231_2glo_A_1 ModCRE Homology model CGGGGACCCCCC Region 195-231 · 1 3D model Open · Scan
TFS_sp_Q9P215_POGK_HUMAN:269:316_1hlv_A_1 ModCRE Homology model TTCCGGTTTTTGAA Region 269-316 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 609 aa
195-231
269-316

Region 195-231 1 PWM

Residues
37 aa
Domains
PF09607 · Brinker DNA-binding domain
3D models
1 active PDB · 1 summary row
Templates
2GLO
Sources
Predicted = Low
Scan this region Show models

Region 269-316 1 PWM

Residues
48 aa
Domains
PF03221 · Tc5 transposase DNA-binding domain
3D models
1 active PDB · 1 summary row
Templates
1HLV
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models 2 summary rows
Region 195-2311 model · 1 summary row
Actions
Predicted = Low TFS_sp_Q9P215_POGK_HUMAN:195:231_2glo_A_1 2glo 195-231 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 2glo 195:231 195 231 P:A · DNA:B,C 29.7% / 54.1% 62 View · PDB TFS_sp_Q9P215_POGK_HUMAN:195:231_2glo_A_1
Region 269-3161 model · 1 summary row
Actions
Predicted = Low TFS_sp_Q9P215_POGK_HUMAN:269:316_1hlv_A_1 1hlv 269-316 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 1hlv 195:231 269 316 P:A · DNA:B,C 35.4% / 58.3% 35 View · PDB TFS_sp_Q9P215_POGK_HUMAN:269:316_1hlv_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
48-86PF01352KRAB boxNo overlap with loaded model regions
195-247PF09607Brinker DNA-binding domainoverlaps 195-231
260-322PF03221Tc5 transposase DNA-binding domainoverlaps 269-316
396-567PF03184DDE superfamily endonucleaseNo overlap with loaded model regions