ModCRE DB

Transcription factor

Q9UBC0 - ONECUT1

Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1) (One cut homeobox 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 465 aa

12 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known12
MotifPredictionSourceDNA bindingSupportLogoActions
MA0679.1 Known JASPAR AAAAAATCGATAAT Direct PWM Open · Scan
MA0679.2 Known JASPAR AAAAAATCAATAAATA Direct PWM Open · Scan
MA0679.3 Known JASPAR AAATCAATA Direct PWM Open · Scan
M02943_2.00 Known CisBP ATTATCGATTTTTT Direct PWM Open · Scan
M02944_2.00 Known CisBP ATTATCGATTTTTT Direct PWM Open · Scan
M03715_2.00 Known CisBP AGATCGATAAT Direct PWM Open · Scan
M04673_2.00 Known CisBP GTATCGATCG Direct PWM Open · Scan
M04674_2.00 Known CisBP TTATTGATTG Direct PWM Open · Scan
M04675_2.00 Known CisBP CCCGATCGATAC Direct PWM Open · Scan
M04676_2.00 Known CisBP ACGGATCAATAA Direct PWM Open · Scan
M09022_2.00 Known CisBP TTTATTGATTT Direct PWM Open · Scan
HNF6_HUMAN.H11MO.0.B Known HOCOMOCO TTTATTGATTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 465 aa
352-439

Region 352-439 0 PWM

Residues
88 aa
Domains
PF02376 · CUT domain PF00046 · Homeodomain
3D models
1 active PDB
Templates
1HF0
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 352-4391 model
Actions
Predicted = Low DIMER_Q9UBC0:352:439_1hf0_B_1 1hf0 352-439 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
289-365PF02376CUT domainoverlaps 352-439
386-439PF00046Homeodomainoverlaps 352-439