ModCRE DB

Transcription factor

Q9UD57 - NKX1-2

NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 310 aa

181 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M03798_2.00 NN 70+% CisBP GGTAATTAGC 92.4% identity Open · Scan
Nearest Neighbor (70% - 40%)180
MotifPredictionSourceDNA bindingSupportLogoActions
M06339_2.00 NN 70-40% CisBP TTTAATTGG 65.5% identity Open · Scan
MA0877.1 NN 70-40% JASPAR GCTAATTGCT 65.0% identity Open · Scan
MA0877.2 NN 70-40% JASPAR CTAAACGG 65.0% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 63.3% identity Open · Scan
MA0708.1 NN 70-40% JASPAR CCAATTAA 63.1% identity Open · Scan
MA0709.1 NN 70-40% JASPAR CCAATTAA 63.1% identity Open · Scan
M02106_2.00 NN 70-40% CisBP ATATTAATTGGTT 62.0% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 62.0% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 62.0% identity Open · Scan
MA0635.1 NN 70-40% JASPAR GCTAAACGGT 61.6% identity Open · Scan
MA0886.1 NN 70-40% JASPAR GCTAATTAGC 61.6% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 61.4% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 61.4% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 61.0% identity Open · Scan
M05392_2.00 NN 70-40% CisBP GTTAAGTGC 60.3% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 60.3% identity Open · Scan
MA0896.1 NN 70-40% JASPAR ACAAGCAATTAATGAAT 60.3% identity Open · Scan
MA1471.1 NN 70-40% JASPAR AAAAACCATTAC 60.3% identity Open · Scan
M03152_2.00 NN 70-40% CisBP TAATTAGCTAATTA 60.0% identity Open · Scan
MA0612.1 NN 70-40% JASPAR CCTAATTACC 60.0% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 59.3% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 59.3% identity Open · Scan
M10805_2.00 NN 70-40% CisBP GGACAAATAGCCC 58.6% identity Open · Scan
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 58.4% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 58.4% identity Open · Scan
M03810_2.00 NN 70-40% CisBP GCTAAACGGT 58.3% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 58.2% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 58.2% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 57.8% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 57.8% identity Open · Scan
MA0124.1 NN 70-40% JASPAR ATACTTA 57.8% identity Open · Scan
MA0124.2 NN 70-40% JASPAR ACCACTTAA 57.8% identity Open · Scan
MA0885.1 NN 70-40% JASPAR GCAATTAA 57.8% identity Open · Scan
M00464_2.00 NN 70-40% CisBP CTAATTACC 57.6% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 57.6% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 57.6% identity Open · Scan
MA0723.1 NN 70-40% JASPAR CTAATTAC 57.6% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 57.4% identity Open · Scan
M09573_2.00 NN 70-40% CisBP GTTAATGA 57.4% identity Open · Scan
MA0674.1 NN 70-40% JASPAR GTAATTAA 57.4% identity Open · Scan
M03814_2.00 NN 70-40% CisBP GTAATGGC 57.3% identity Open · Scan
M06554_2.00 NN 70-40% CisBP TTAATTG 57.1% identity Open · Scan
MA0122.1 NN 70-40% JASPAR TTAAGTGGA 56.9% identity Open · Scan
MA0122.2 NN 70-40% JASPAR ACCACTTAA 56.9% identity Open · Scan
M00497_2.00 NN 70-40% CisBP TTAAGTGGT 56.8% identity Open · Scan
M05042_2.00 NN 70-40% CisBP GTCAAGTGGT 56.8% identity Open · Scan
MA0672.1 NN 70-40% JASPAR ACCACTTGAA 56.8% identity Open · Scan
MA0666.1 NN 70-40% JASPAR CCAATTAG 56.4% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 56.1% identity Open · Scan
M03276_2.00 NN 70-40% CisBP GCTAATTAGC 56.1% identity Open · Scan
M04906_2.00 NN 70-40% CisBP ATAACGAC 56.1% identity Open · Scan
M05179_2.00 NN 70-40% CisBP ATAATTGC 56.1% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 56.1% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 56.1% identity Open · Scan
M09195_2.00 NN 70-40% CisBP TAATTATAGGT 56.1% identity Open · Scan
MA0642.1 NN 70-40% JASPAR CCCAATTAGC 56.1% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 56.1% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 56.1% identity Open · Scan
MA0879.1 NN 70-40% JASPAR CCTAATTATC 56.1% identity Open · Scan
MA0882.1 NN 70-40% JASPAR CCAATTAC 56.1% identity Open · Scan
MA1476.1 NN 70-40% JASPAR GCAATTAC 56.1% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 55.9% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 55.9% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 55.5% identity Open · Scan
M00496_2.00 NN 70-40% CisBP TTAAGTGGTT 55.1% identity Open · Scan
M03234_2.00 NN 70-40% CisBP TTTTAATTGGT 55.1% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 55.1% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 55.1% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 55.1% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 54.8% identity Open · Scan
M06359_2.00 NN 70-40% CisBP TTTAATTA 54.7% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 54.3% identity Open · Scan
M01503_2.00 NN 70-40% CisBP TTAATTAC 54.3% identity Open · Scan
MA0880.1 NN 70-40% JASPAR CCAATTAC 54.3% identity Open · Scan
M00376_2.00 NN 70-40% CisBP TCAAGTGCTT 54.2% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 54.2% identity Open · Scan
M03076_2.00 NN 70-40% CisBP TTAATTAAATTAA 54.2% identity Open · Scan
M06378_2.00 NN 70-40% CisBP GCTCAAGTGC 54.2% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 54.2% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 54.2% identity Open · Scan
MA0675.1 NN 70-40% JASPAR CTAATTAA 54.2% identity Open · Scan
MA0874.1 NN 70-40% JASPAR GTCCATTAATTAATGGA 54.2% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 54.2% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 54.2% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 54.0% identity Open · Scan
M09676_2.00 NN 70-40% CisBP TTAATGA 53.8% identity Open · Scan
MA0897.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 53.8% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 53.6% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 53.6% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 53.6% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 53.4% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 53.4% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 53.4% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 53.4% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 53.4% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 53.4% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 53.4% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 53.4% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 53.4% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 53.4% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 53.4% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 53.3% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 53.3% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 53.3% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 53.3% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 53.2% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 53.2% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 53.1% identity Open · Scan
MA1481.1 NN 70-40% JASPAR CTAATTAC 53.1% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 52.6% identity Open · Scan
MA0881.1 NN 70-40% JASPAR CCAATTAC 52.6% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 52.5% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 52.5% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 52.5% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 52.5% identity Open · Scan
M03854_2.00 NN 70-40% CisBP GTGAAGTGG 52.4% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 52.3% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 52.3% identity Open · Scan
MA0724.1 NN 70-40% JASPAR ACCGATTAG 52.3% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 52.1% identity Open · Scan
M00492_2.00 NN 70-40% CisBP TAATTAGC 51.8% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 51.8% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 51.7% identity Open · Scan
M02153_2.00 NN 70-40% CisBP GCCCAATAAA 51.7% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 51.7% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 51.7% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 51.7% identity Open · Scan
M00402_2.00 NN 70-40% CisBP TAATTAG 51.6% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 51.6% identity Open · Scan
M06322_2.00 NN 70-40% CisBP TTAATTA 51.6% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 51.6% identity Open · Scan
MA0713.1 NN 70-40% JASPAR TAATTTAATTA 51.6% identity Open · Scan
M03278_2.00 NN 70-40% CisBP TTAATTTAATTAT 51.5% identity Open · Scan
M04917_2.00 NN 70-40% CisBP GTAATTAG 51.5% identity Open · Scan
MA0853.1 NN 70-40% JASPAR CGCATTAATTAATTACC 51.5% identity Open · Scan
MA0063.2 NN 70-40% JASPAR ACCACTCAAAA 51.3% identity Open · Scan
M06540_2.00 NN 70-40% CisBP TTAATTA 50.9% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 50.8% identity Open · Scan
M01244_2.00 NN 70-40% CisBP ATTAATTAC 50.8% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 50.8% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 50.8% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 50.8% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 50.8% identity Open · Scan
M06361_2.00 NN 70-40% CisBP TTTAATTA 50.8% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 50.8% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 50.8% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 50.8% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 50.8% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 50.7% identity Open · Scan
MA0634.1 NN 70-40% JASPAR TCTAATTAAA 50.7% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 50.7% identity Open · Scan
M03777_2.00 NN 70-40% CisBP GTAATTGC 50.6% identity Open · Scan
MA0063.1 NN 70-40% JASPAR TTAATTG 50.6% identity Open · Scan
M00354_2.00 NN 70-40% CisBP CCGATTA 50.0% identity Open · Scan
M00385_2.00 NN 70-40% CisBP TTAAGTGG 50.0% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M00438_2.00 NN 70-40% CisBP TTTAAGTGC 50.0% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 50.0% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 50.0% identity Open · Scan
M02170_2.00 NN 70-40% CisBP TTAATTAG 50.0% identity Open · Scan
M02181_2.00 NN 70-40% CisBP TTAAGTGGT 50.0% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 50.0% identity Open · Scan
M03204_2.00 NN 70-40% CisBP TTAATTGG 50.0% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 50.0% identity Open · Scan
M05367_2.00 NN 70-40% CisBP TTAATTAG 50.0% identity Open · Scan
M05419_2.00 NN 70-40% CisBP CGATTAGTCACGGTT 50.0% identity Open · Scan
M06290_2.00 NN 70-40% CisBP TTTAATTA 50.0% identity Open · Scan
M09146_2.00 NN 70-40% CisBP CTTGAGTGGC 50.0% identity Open · Scan
MA0027.1 NN 70-40% JASPAR AAGTAGTGCCC 50.0% identity Open · Scan
MA0027.2 NN 70-40% JASPAR CTAATTAG 50.0% identity Open · Scan
MA0119.1 NN 70-40% JASPAR TGGCACCATGCCAA 50.0% identity Open · Scan
MA0630.1 NN 70-40% JASPAR TTAATTGG 50.0% identity Open · Scan
MA0680.1 NN 70-40% JASPAR TAATCGATTA 50.0% identity Open · Scan
MA0681.1 NN 70-40% JASPAR TAATTTAATTA 50.0% identity Open · Scan
MA0710.1 NN 70-40% JASPAR GCTAATTAGC 50.0% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 50.0% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 50.0% identity Open · Scan
MA0780.1 NN 70-40% JASPAR TAATCGATTA 50.0% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 50.0% identity Open · Scan
MA1645.1 NN 70-40% JASPAR TAACCACTCAAGAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 310 aa
164-219

Region 164-219 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
3RKQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 164-2191 model
Actions
Predicted = Low DIMER_Q9UD57:164:219_3rkq_A_1 3rkq 164-219 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
164-220PF00046Homeodomainoverlaps 164-219