ModCRE DB

Transcription factor

Q9UDY3 - homeobox

Homeobox protein HB9

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 237 aa

185 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0707.1 NN 70+% JASPAR GGTAATTAAA 99.5% identity Open · Scan
M00388_2.00 NN 70+% CisBP CTAATTGCTT 89.1% identity Open · Scan
M06545_2.00 NN 70+% CisBP TTAATTA 71.9% identity Open · Scan
M06544_2.00 NN 70+% CisBP GTAATTA 70.6% identity Open · Scan
Nearest Neighbor (70% - 40%)181
MotifPredictionSourceDNA bindingSupportLogoActions
M06312_2.00 NN 70-40% CisBP TTAATTA 68.8% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 68.5% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 66.6% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 66.6% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 66.6% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 66.6% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 66.6% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 66.6% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 66.6% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 66.1% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 66.1% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 65.1% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 65.1% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 64.9% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 64.8% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 64.5% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 64.5% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 64.5% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 64.4% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 63.6% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 63.3% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 63.1% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 62.9% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 62.9% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 62.9% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 61.9% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 61.6% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 61.4% identity Open · Scan
M10805_2.00 NN 70-40% CisBP GGACAAATAGCCC 61.4% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 61.4% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 61.4% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 61.4% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 61.4% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 61.4% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 61.1% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 61.1% identity Open · Scan
M06339_2.00 NN 70-40% CisBP TTTAATTGG 61.0% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 60.6% identity Open · Scan
MA0666.1 NN 70-40% JASPAR CCAATTAG 60.6% identity Open · Scan
MA0708.1 NN 70-40% JASPAR CCAATTAA 60.6% identity Open · Scan
MA0709.1 NN 70-40% JASPAR CCAATTAA 60.6% identity Open · Scan
MA0877.1 NN 70-40% JASPAR GCTAATTGCT 60.6% identity Open · Scan
MA0877.2 NN 70-40% JASPAR CTAAACGG 60.6% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 60.3% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 59.6% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 59.6% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 59.6% identity Open · Scan
MA0122.1 NN 70-40% JASPAR TTAAGTGGA 59.6% identity Open · Scan
MA0122.2 NN 70-40% JASPAR ACCACTTAA 59.6% identity Open · Scan
MA0124.2 NN 70-40% JASPAR ACCACTTAA 59.6% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 59.6% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 59.6% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 59.6% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 59.6% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 59.6% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 59.6% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 59.6% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 59.6% identity Open · Scan
M00457_2.00 NN 70-40% CisBP TTAATTGCT 59.3% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 59.3% identity Open · Scan
MA1471.1 NN 70-40% JASPAR AAAAACCATTAC 59.3% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 59.2% identity Open · Scan
MA0886.1 NN 70-40% JASPAR GCTAATTAGC 59.0% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 58.7% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 58.7% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 58.7% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 58.3% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 58.3% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 57.8% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 57.8% identity Open · Scan
MA0699.1 NN 70-40% JASPAR GCCAATTAGC 57.8% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 57.6% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 57.6% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 57.6% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 57.1% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 56.9% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 56.9% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 56.6% identity Open · Scan
M00497_2.00 NN 70-40% CisBP TTAAGTGGT 56.4% identity Open · Scan
M05042_2.00 NN 70-40% CisBP GTCAAGTGGT 56.4% identity Open · Scan
MA0672.1 NN 70-40% JASPAR ACCACTTGAA 56.4% identity Open · Scan
M00465_2.00 NN 70-40% CisBP TTAATTAG 56.1% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 56.1% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 56.1% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 56.1% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 56.1% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 56.0% identity Open · Scan
M02106_2.00 NN 70-40% CisBP ATATTAATTGGTT 55.9% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 55.9% identity Open · Scan
M04906_2.00 NN 70-40% CisBP ATAACGAC 55.9% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 55.9% identity Open · Scan
MA0063.1 NN 70-40% JASPAR TTAATTG 55.9% identity Open · Scan
MA0063.2 NN 70-40% JASPAR ACCACTCAAAA 55.9% identity Open · Scan
MA0635.1 NN 70-40% JASPAR GCTAAACGGT 55.9% identity Open · Scan
MA0882.1 NN 70-40% JASPAR CCAATTAC 55.9% identity Open · Scan
MA0885.1 NN 70-40% JASPAR GCAATTAA 55.9% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 55.9% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 55.9% identity Open · Scan
M03152_2.00 NN 70-40% CisBP TAATTAGCTAATTA 55.7% identity Open · Scan
MA0612.1 NN 70-40% JASPAR CCTAATTACC 55.7% identity Open · Scan
M03777_2.00 NN 70-40% CisBP GTAATTGC 55.5% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 55.4% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 54.3% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 54.3% identity Open · Scan
M06286_2.00 NN 70-40% CisBP CTTAAGTG 54.3% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 54.3% identity Open · Scan
MA0618.1 NN 70-40% JASPAR TTAATTAG 54.3% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 54.3% identity Open · Scan
M01503_2.00 NN 70-40% CisBP TTAATTAC 54.2% identity Open · Scan
M05179_2.00 NN 70-40% CisBP ATAATTGC 54.2% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 54.2% identity Open · Scan
M09195_2.00 NN 70-40% CisBP TAATTATAGGT 54.2% identity Open · Scan
MA0879.1 NN 70-40% JASPAR CCTAATTATC 54.2% identity Open · Scan
MA0880.1 NN 70-40% JASPAR CCAATTAC 54.2% identity Open · Scan
MA1476.1 NN 70-40% JASPAR GCAATTAC 54.2% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 54.0% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 54.0% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 54.0% identity Open · Scan
M00496_2.00 NN 70-40% CisBP TTAAGTGGTT 53.7% identity Open · Scan
M00385_2.00 NN 70-40% CisBP TTAAGTGG 53.5% identity Open · Scan
MA0673.1 NN 70-40% JASPAR CCACTTGAA 53.5% identity Open · Scan
M00376_2.00 NN 70-40% CisBP TCAAGTGCTT 53.3% identity Open · Scan
M06554_2.00 NN 70-40% CisBP TTAATTG 53.0% identity Open · Scan
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 53.0% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 53.0% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 52.6% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 52.6% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 52.5% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 52.5% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 52.5% identity Open · Scan
M09146_2.00 NN 70-40% CisBP CTTGAGTGGC 52.5% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 52.5% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 52.5% identity Open · Scan
M03076_2.00 NN 70-40% CisBP TTAATTAAATTAA 52.3% identity Open · Scan
MA0874.1 NN 70-40% JASPAR GTCCATTAATTAATGGA 52.3% identity Open · Scan
M05392_2.00 NN 70-40% CisBP GTTAAGTGC 52.1% identity Open · Scan
MA0896.1 NN 70-40% JASPAR ACAAGCAATTAATGAAT 52.1% identity Open · Scan
M00451_2.00 NN 70-40% CisBP ATTAATTA 51.7% identity Open · Scan
M02128_2.00 NN 70-40% CisBP ATTAATTA 51.7% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 51.7% identity Open · Scan
MA0724.1 NN 70-40% JASPAR ACCGATTAG 51.7% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 51.7% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 51.6% identity Open · Scan
M06359_2.00 NN 70-40% CisBP TTTAATTA 51.6% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 51.6% identity Open · Scan
M03234_2.00 NN 70-40% CisBP TTTTAATTGGT 51.5% identity Open · Scan
MA0897.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 51.5% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 51.3% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 51.2% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 51.2% identity Open · Scan
M02153_2.00 NN 70-40% CisBP GCCCAATAAA 50.9% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 50.9% identity Open · Scan
M00526_2.00 NN 70-40% CisBP ATTAATTA 50.8% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 50.8% identity Open · Scan
M02170_2.00 NN 70-40% CisBP TTAATTAG 50.8% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 50.8% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 50.8% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 50.8% identity Open · Scan
M05003_2.00 NN 70-40% CisBP ATAACGAC 50.8% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 50.8% identity Open · Scan
MA0119.1 NN 70-40% JASPAR TGGCACCATGCCAA 50.8% identity Open · Scan
MA1577.1 NN 70-40% JASPAR CTAATTAG 50.8% identity Open · Scan
M03810_2.00 NN 70-40% CisBP GCTAAACGGT 50.7% identity Open · Scan
M03854_2.00 NN 70-40% CisBP GTGAAGTGG 50.7% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 50.6% identity Open · Scan
M00417_2.00 NN 70-40% CisBP GCTAATTA 50.0% identity Open · Scan
M00438_2.00 NN 70-40% CisBP TTTAAGTGC 50.0% identity Open · Scan
M03276_2.00 NN 70-40% CisBP GCTAATTAGC 50.0% identity Open · Scan
M03278_2.00 NN 70-40% CisBP TTAATTTAATTAT 50.0% identity Open · Scan
M04917_2.00 NN 70-40% CisBP GTAATTAG 50.0% identity Open · Scan
M05027_2.00 NN 70-40% CisBP ATAATTAC 50.0% identity Open · Scan
M06219_2.00 NN 70-40% CisBP GTTAATCC 50.0% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 50.0% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 50.0% identity Open · Scan
M09573_2.00 NN 70-40% CisBP GTTAATGA 50.0% identity Open · Scan
MA0642.1 NN 70-40% JASPAR CCCAATTAGC 50.0% identity Open · Scan
MA0674.1 NN 70-40% JASPAR GTAATTAA 50.0% identity Open · Scan
MA0675.1 NN 70-40% JASPAR CTAATTAA 50.0% identity Open · Scan
MA0853.1 NN 70-40% JASPAR CGCATTAATTAATTACC 50.0% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 50.0% identity Open · Scan
MA1645.1 NN 70-40% JASPAR TAACCACTCAAGAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 237 aa
78-133

Region 78-133 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
3RKQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 78-1331 model
Actions
Predicted = Low DIMER_Q9UDY3:78:133_3rkq_A_1 3rkq 78-133 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
78-134PF00046Homeodomainoverlaps 78-133