Transcription factor

Q9UIF9 - BAZ2A

Bromodomain adjacent to zinc finger domain protein 2A (Transcription termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) (hWALp3)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1905 aa

7 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE7

Motif	Prediction	Source	DNA binding	Support	Actions
TFS_sp_Q9UIF9_BAZ2A_HUMAN:543:650_7mwl_A_1	ModCRE	Homology model	AGGCGTTA	Region 543-650 · 1 3D model	Open · Scan
TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7fhj_A_1	ModCRE	Homology model	CAAGATTA	Region 544-649 · 1 3D model	Open · Scan
TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7mwh_A_1	ModCRE	Homology model	AGGGTTTA	Region 544-649 · 1 3D model	Open · Scan
TFS_sp_Q9UIF9_BAZ2A_HUMAN:556:601_6c1u_B_1	ModCRE	Homology model	CCCCCAC	Region 556-601 · 1 3D model	Open · Scan
TFS_sp_Q9UIF9_BAZ2A_HUMAN:556:601_6c2f_A_1	ModCRE	Homology model	ATCGGGGCTGG	Region 556-601 · 1 3D model	Open · Scan
TFS_sp_Q9UIF9_BAZ2A_HUMAN:556:601_6cnp_A_1	ModCRE	Homology model	CCACCCCCCC	Region 556-601 · 1 3D model	Open · Scan
TFS_sp_Q9UIF9_BAZ2A_HUMAN:556:601_6cnq_A_1	ModCRE	Homology model	CAGACCCCAA	Region 556-601 · 1 3D model	Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1905 aa

543-650

1677-1724

Region 543-650 7 PWM

Residues: 108 aa
Domains: PF01429 · Methyl-CpG binding domain
3D models: 9 active PDBs · 5 summary rows
Templates: 6C1U, 6C2F, 6CNP, 6CNQ, 7FHJ, 7MWH, 7MWL
Sources: Predicted = Low

Scan this region Show models

Region 1677-1724 0 PWM

Residues: 48 aa
Domains: PF00628 · PHD-finger
3D models: 1 active PDB
Templates: 5XFR
Sources: Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

10 active PDB models 5 summary rows

Region 543-6509 models · 5 summary rows

				Actions
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:543:650_7mwl_A_1	7mwl	543-650	View model · PDB
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7fhj_A_1	7fhj	544-649	View model · PDB
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7fhj_B_1	7fhj	544-649	View model · PDB
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7mwh_A_1	7mwh	544-649	View model · PDB
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7mwh_B_1	7mwh	544-649	View model · PDB
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:556:601_6c1u_B_1	6c1u	556-601	View model · PDB
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:556:601_6c2f_A_1	6c2f	556-601	View model · PDB
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:556:601_6cnp_A_1	6cnp	556-601	View model · PDB
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:556:601_6cnq_A_1	6cnq	556-601	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	7mwl	543:650	543	650	P:A · DNA:E,F	100.0% / 100.0%	100	View · PDB TFS_sp_Q9UIF9_BAZ2A_HUMAN:543:650_7mwl_A_1
2	7mwh	543:650	544	649	P:B · DNA:C,D	100.0% / 100.0%	100	View · PDB TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7mwh_B_1
3	7mwh	543:650	544	649	P:A · DNA:C,D	100.0% / 100.0%	100	View · PDB TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7mwh_A_1
4	7fhj	543:650	544	649	P:B · DNA:C,D	100.0% / 100.0%	100	View · PDB TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7fhj_B_1
5	7fhj	543:650	544	649	P:A · DNA:C,D	100.0% / 100.0%	100	View · PDB TFS_sp_Q9UIF9_BAZ2A_HUMAN:544:649_7fhj_A_1

Region 1677-17241 model

				Actions
Predicted = Low	TFS_sp_Q9UIF9_BAZ2A_HUMAN:1677:1724_5xfr_A_1	5xfr	1677-1724	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
547-619	PF01429	Methyl-CpG binding domain	overlaps 543-650
850-910	PF02791	DDT domain	No overlap with loaded model regions
952-993	PF15612	WSTF, HB1, Itc1p, MBD9 motif 1	No overlap with loaded model regions
1112-1472	PF15613	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	No overlap with loaded model regions
1679-1723	PF00628	PHD-finger	overlaps 1677-1724
1802-1883	PF00439	Bromodomain	No overlap with loaded model regions