ModCRE DB

Transcription factor

Q9UL36 - ZNF236

Zinc finger protein 236

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1845 aa

23 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)18
MotifPredictionSourceDNA bindingSupportLogoActions
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 65.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 55.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 53.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 53.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 53.0% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 52.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 51.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 51.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 51.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 50.6% identity Open · Scan
M04430_2.00 NN 70-40% CisBP GACCACGCCCA 50.5% identity Open · Scan
MA0742.1 NN 70-40% JASPAR GACCACGCCCTTATT 50.5% identity Open · Scan
MA1516.1 NN 70-40% JASPAR GACCACGCCCA 50.5% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.0% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9UL36_ZN236_HUMAN:197:308_5k5h_A_1 ModCRE Homology model CTCTATACCCCG Region 197-308 · 1 3D model Open · Scan
TFS_sp_Q9UL36_ZN236_HUMAN:482:590_6e93_A_1 ModCRE Homology model GGGCGAACTCGCGCGCGT Region 482-590 · 1 3D model Open · Scan
TFS_sp_Q9UL36_ZN236_HUMAN:482:590_6e94_A_1 ModCRE Homology model CCGCGGACACGCGCGCTT Region 482-590 · 1 3D model Open · Scan
TFS_sp_Q9UL36_ZN236_HUMAN:654:763_5egb_A_1 ModCRE Homology model AGGAGATTCGGAGCCCGG Region 654-763 · 1 3D model Open · Scan
TFS_sp_Q9UL36_ZN236_HUMAN:654:763_5ei9_E_1 ModCRE Homology model GGGGGGCAGGGGAGGCT Region 654-763 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1845 aa
197-308
480-763
966-1243

Region 197-308 1 PWM

Residues
112 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger
3D models
1 active PDB
Templates
5K5H
Sources
Predicted = Low
Scan this region Show models

Region 480-763 4 PWM

Residues
284 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
9 active PDBs · 5 summary rows
Templates
1LLM, 5EGB, 5EI9, 5V3J, 5V3M, 5WJQ, 6E93, 6E94, ...
Sources
Predicted = Low
Scan this region Show models

Region 966-1243 0 PWM

Residues
278 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB · 1 summary row
Templates
7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 197-3081 model
Actions
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:197:308_5k5h_A_1 5k5h 197-308 View model · PDB
Region 480-7639 models · 5 summary rows
Actions
Predicted = Low DIMER_sp_Q9UL36_ZN236_HUMAN:535:584_1llm_C_1 1llm 535-584 View model · PDB
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:480:731_8ssr_A_1 8ssr 480-731 View model · PDB
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:482:590_6e93_A_1 6e93 482-590 View model · PDB
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:482:590_6e94_A_1 6e94 482-590 View model · PDB
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:482:763_5v3j_E_1 5v3j 482-763 View model · PDB
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:482:763_5v3m_C_1 5v3m 482-763 View model · PDB
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:484:735_5wjq_D_1 5wjq 484-735 View model · PDB
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:654:763_5egb_A_1 5egb 654-763 View model · PDB
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:654:763_5ei9_E_1 5ei9 654-763 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 441:763 535,535 584,584 P:C,D · DNA:A,B 52.0% / 66.0% 57,58 View · PDB DIMER_sp_Q9UL36_ZN236_HUMAN:535:584_1llm_C_1
1 5wjq 441:763 484 735 P:D · DNA:A,B 34.5% / 48.4% 87 View · PDB TFS_sp_Q9UL36_ZN236_HUMAN:484:735_5wjq_D_1
5 8ssr 441:763 480 731 P:A · DNA:B,C 32.8% / 47.1% 95 View · PDB TFS_sp_Q9UL36_ZN236_HUMAN:480:731_8ssr_A_1
2 5v3m 441:763 482 763 P:C · DNA:A,B 30.7% / 45.6% 98 View · PDB TFS_sp_Q9UL36_ZN236_HUMAN:482:763_5v3m_C_1
3 5v3j 441:763 482 763 P:E · DNA:A,B 30.7% / 45.6% 98 View · PDB TFS_sp_Q9UL36_ZN236_HUMAN:482:763_5v3j_E_1
Region 966-12431 model · 1 summary row
Actions
Predicted = Low TFS_sp_Q9UL36_ZN236_HUMAN:966:1243_7w1m_H_1 7w1m 966-1243 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 7w1m 441:763 966 1243 P:H · DNA:F,G 26.8% / 45.7% 86 View · PDB TFS_sp_Q9UL36_ZN236_HUMAN:966:1243_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
39-57PF12874Zinc-finger of C2H2 typeNo overlap with loaded model regions
94-115PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
153-177PF13912C2H2-type zinc fingerNo overlap with loaded model regions
197-219PF00096Zinc finger, C2H2 typeoverlaps 197-308
225-247PF00096Zinc finger, C2H2 typeoverlaps 197-308
285-308PF13912C2H2-type zinc fingeroverlaps 197-308
482-504PF00096Zinc finger, C2H2 typeoverlaps 480-763
510-532PF00096Zinc finger, C2H2 typeoverlaps 480-763
538-560PF00096Zinc finger, C2H2 typeoverlaps 480-763
566-588PF00096Zinc finger, C2H2 typeoverlaps 480-763
685-707PF00096Zinc finger, C2H2 typeoverlaps 480-763
741-763PF00096Zinc finger, C2H2 typeoverlaps 480-763
967-989PF00096Zinc finger, C2H2 typeoverlaps 966-1243
995-1017PF00096Zinc finger, C2H2 typeoverlaps 966-1243
1023-1045PF00096Zinc finger, C2H2 typeoverlaps 966-1243
1182-1205PF13465Zinc-finger double domainoverlaps 966-1243
1223-1245PF00096Zinc finger, C2H2 typeoverlaps 966-1243
1688-1708PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1722-1744PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1750-1772PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1778-1801PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions