ModCRE DB

Transcription factor

Q9ULM2 - ZNF490

Zinc finger protein 490

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 529 aa

3 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known3
MotifPredictionSourceDNA bindingSupportLogoActions
M08366_2.00 Known CisBP GTTTGCTGCTTACAA Direct PWM Open · Scan
M08941_2.00 Known CisBP TGGGTCTCTTGAAGGCAGCATATC Direct PWM Open · Scan
ZN490_HUMAN.H11MO.0.C Known HOCOMOCO TGGGTCTCTTGAAGGCAGCATATC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 529 aa
193-469

Region 193-469 0 PWM

Residues
277 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 193-4691 model
Actions
Predicted = Low TFS_Q9ULM2:193:469_5v3j_E_1 5v3j 193-469 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
57-97PF01352KRAB boxNo overlap with loaded model regions
157-178PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
194-216PF00096Zinc finger, C2H2 typeoverlaps 193-469
222-244PF00096Zinc finger, C2H2 typeoverlaps 193-469
264-288PF13465Zinc-finger double domainoverlaps 193-469
306-328PF00096Zinc finger, C2H2 typeoverlaps 193-469
334-356PF00096Zinc finger, C2H2 typeoverlaps 193-469
362-384PF00096Zinc finger, C2H2 typeoverlaps 193-469
390-412PF00096Zinc finger, C2H2 typeoverlaps 193-469
418-440PF00096Zinc finger, C2H2 typeoverlaps 193-469
446-468PF00096Zinc finger, C2H2 typeoverlaps 193-469
502-524PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions