ModCRE DB

Transcription factor

Q9UNN4 - GTF2A1L

TFIIA-alpha and beta-like factor (General transcription factor II A, 1-like factor)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 478 aa

10 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_5iy7_N_1 ModCRE Homology model TAGGGTTTTATAAAA Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_5iy9_N_1 ModCRE Homology model CTGGGCCCCA Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_5iya_N_1 ModCRE Homology model TTAGGCGCCGTAAGA Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_5iyd_N_1 ModCRE Homology model GTTAGCCCCA Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_6o9l_N_1 ModCRE Homology model TTGGGCCGCCCGAAGA Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvs_U_1 ModCRE Homology model TTTAGCCTTTAAAAAAAA Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvt_U_1 ModCRE Homology model TTTGGCCTCTTAAAAAGC Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvu_U_1 ModCRE Homology model TTTAATTTTATAATTAAA Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvy_U_1 ModCRE Homology model TTTGGCCTTTTAAAAAAA Region 411-478 · 1 3D model Open · Scan
TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvz_U_1 ModCRE Homology model TTCGGCCTTTTATAAAGA Region 411-478 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 478 aa
411-478

Region 411-478 10 PWM

Residues
68 aa
Domains
PF03153 · Transcription factor IIA, alpha/beta subunit
3D models
10 active PDBs · 5 summary rows
Templates
5IY7, 5IY9, 5IYA, 5IYD, 6O9L, 7NVS, 7NVT, 7NVU, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 5 summary rows
Region 411-47810 models · 5 summary rows
Actions
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_5iy7_N_1 5iy7 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_5iy9_N_1 5iy9 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_5iya_N_1 5iya 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_5iyd_N_1 5iyd 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_6o9l_N_1 6o9l 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvs_U_1 7nvs 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvt_U_1 7nvt 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvu_U_1 7nvu 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvy_U_1 7nvy 411-478 View model · PDB
Predicted = Low TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvz_U_1 7nvz 411-478 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 7nvz 411:478 411 478 P:U · DNA:N,T 75.0% / 91.2% 60 View · PDB TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvz_U_1
2 7nvy 411:478 411 478 P:U · DNA:N,T 75.0% / 91.2% 60 View · PDB TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvy_U_1
3 7nvu 411:478 411 478 P:U · DNA:N,T 75.0% / 91.2% 60 View · PDB TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvu_U_1
4 7nvt 411:478 411 478 P:U · DNA:N,T 75.0% / 91.2% 60 View · PDB TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvt_U_1
5 7nvs 411:478 411 478 P:U · DNA:N,T 75.0% / 91.2% 60 View · PDB TFS_sp_Q9UNN4_TF2AY_HUMAN:411:478_7nvs_U_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
10-478PF03153Transcription factor IIA, alpha/beta subunitoverlaps 411-478