ModCRE DB

Transcription factor

Q9UPM6 - LHX6

LIM/homeobox protein Lhx6 (LIM homeobox protein 6) (LIM/homeobox protein Lhx6.1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 363 aa

12 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known12
MotifPredictionSourceDNA bindingSupportLogoActions
MA0658.1 Known JASPAR ACTAATTAGC Direct PWM Open · Scan
MA0658.2 Known JASPAR CTAATTAG Direct PWM Open · Scan
M02086_2.00 Known CisBP TTGATTAC Direct PWM Open · Scan
M03108_2.00 Known CisBP GCTAATTAGT Direct PWM Open · Scan
M03109_2.00 Known CisBP TAATTAGCGCTAATTA Direct PWM Open · Scan
M03110_2.00 Known CisBP TGATTGCAATCA Direct PWM Open · Scan
M04992_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M04993_2.00 Known CisBP TAATTGCAATTA Direct PWM Open · Scan
M04994_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M04995_2.00 Known CisBP CTAACGAG Direct PWM Open · Scan
M04996_2.00 Known CisBP TAATTGCAATCA Direct PWM Open · Scan
M05870_2.00 Known CisBP ATTAATTA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 363 aa
219-276

Region 219-276 0 PWM

Residues
58 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5HOD
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 219-2761 model
Actions
Predicted = Low DIMER_Q9UPM6:219:276_5hod_A_1 5hod 219-276 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
70-127PF00412LIM domainNo overlap with loaded model regions
131-186PF00412LIM domainNo overlap with loaded model regions
220-276PF00046Homeodomainoverlaps 219-276