ModCRE DB

Transcription factor

Q9UPW6 - SATB2

DNA-binding protein SATB2 (Special AT-rich sequence-binding protein 2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 733 aa

5 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9UPW6_SATB2_HUMAN:616:667_1jgg_B_1 ModCRE Homology model TAATGTTATG Region 616-667 · 1 3D model Open · Scan
TFS_sp_Q9UPW6_SATB2_HUMAN:359:441_2o49_A_1 ModCRE Homology model TGCATAGCTTA Region 359-441 · 1 3D model Open · Scan
TFS_sp_Q9UPW6_SATB2_HUMAN:359:441_2o4a_A_1 ModCRE Homology model TGTAAAGCTAA Region 359-441 · 1 3D model Open · Scan
TFS_sp_Q9UPW6_SATB2_HUMAN:360:441_6lff_A_1 ModCRE Homology model ATGGCATTA Region 360-441 · 1 3D model Open · Scan
TFS_sp_Q9UPW6_SATB2_HUMAN:363:429_2d5v_A_1 ModCRE Homology model AAGGGCCCCCCTT Region 363-429 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 733 aa
359-441
616-667

Region 359-441 4 PWM

Residues
83 aa
Domains
PF02376 · CUT domain
3D models
4 active PDBs · 4 summary rows
Templates
2D5V, 2O49, 2O4A, 6LFF
Sources
Predicted = Low
Scan this region Show models

Region 616-667 1 PWM

Residues
52 aa
Domains
PF00046 · Homeodomain
3D models
2 active PDBs · 2 summary rows
Templates
1JGG
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 359-4414 models · 4 summary rows
Actions
Predicted = Low TFS_sp_Q9UPW6_SATB2_HUMAN:359:441_2o49_A_1 2o49 359-441 View model · PDB
Predicted = Low TFS_sp_Q9UPW6_SATB2_HUMAN:359:441_2o4a_A_1 2o4a 359-441 View model · PDB
Predicted = Low TFS_sp_Q9UPW6_SATB2_HUMAN:360:441_6lff_A_1 6lff 360-441 View model · PDB
Predicted = Low TFS_sp_Q9UPW6_SATB2_HUMAN:363:429_2d5v_A_1 2d5v 363-429 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 2o4a 359:441 359 441 P:A · DNA:B,C 89.2% / 94.0% 98 View · PDB TFS_sp_Q9UPW6_SATB2_HUMAN:359:441_2o4a_A_1
2 2o49 359:441 359 441 P:A · DNA:B,C 89.2% / 94.0% 98 View · PDB TFS_sp_Q9UPW6_SATB2_HUMAN:359:441_2o49_A_1
3 6lff 359:441 360 441 P:A · DNA:C,D 89.0% / 93.9% 100 View · PDB TFS_sp_Q9UPW6_SATB2_HUMAN:360:441_6lff_A_1
4 2d5v 359:441 363 429 P:A · DNA:C,D 37.3% / 59.7% 48 View · PDB TFS_sp_Q9UPW6_SATB2_HUMAN:363:429_2d5v_A_1
Region 616-6672 models · 2 summary rows
Actions
Predicted = Low DIMER_sp_Q9UPW6_SATB2_HUMAN:616:667_1jgg_B_1 1jgg 616-667 View model · PDB
Predicted = Low TFS_sp_Q9UPW6_SATB2_HUMAN:616:667_1jgg_B_1 1jgg 616-667 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1jgg 359:441 616,616 667,667 P:A,B · DNA:C,D 36.5% / 55.8% 89,89 View · PIR DIMER_sp_Q9UPW6_SATB2_HUMAN:616:667_1jgg_B_1
5 1jgg 359:441 616,616 667,667 P:A,B · DNA:C,D 36.5% / 55.8% 89,89 View · PDB TFS_sp_Q9UPW6_SATB2_HUMAN:616:667_1jgg_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
59-156PF16534Ubiquitin-like oligomerisation domain of SATBNo overlap with loaded model regions
163-233PF16557CUT1-like DNA-binding domain of SATBNo overlap with loaded model regions
360-434PF02376CUT domainoverlaps 359-441
481-556PF02376CUT domainNo overlap with loaded model regions
616-671PF00046Homeodomainoverlaps 616-667