ModCRE DB

Transcription factor

Q9Y261 - FOXA2

Hepatocyte nuclear factor 3-beta (HNF-3-beta) (HNF-3B) (Forkhead box protein A2) (Transcription factor 3B) (TCF-3B)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 457 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known9
MotifPredictionSourceDNA bindingSupportLogoActions
MA0047.3 Known JASPAR ATGTAAACATA Direct PWM Open · Scan
MA0047.4 Known JASPAR TGTAAACA Direct PWM Open · Scan
M04815_2.00 Known CisBP CTATGTAAATATTGACATAG Direct PWM Open · Scan
M04816_2.00 Known CisBP CTATGTAAATATTGACATAG Direct PWM Open · Scan
M07959_2.00 Known CisBP GCAAAGTAAACAGAG Direct PWM Open · Scan
M09088_2.00 Known CisBP GCTAAGTAAACA Direct PWM Open · Scan
M09542_2.00 Known CisBP TATGTAAACAAG Direct PWM Open · Scan
M10540_2.00 Known CisBP TAAATAAACATTTCA Direct PWM Open · Scan
FOXA2_HUMAN.H11MO.0.A Known HOCOMOCO TGTTTACTTAGC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 457 aa
159-220

Region 159-220 0 PWM

Residues
62 aa
Domains
PF00250 · Forkhead domain
3D models
1 active PDB
Templates
2A07
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 159-2201 model
Actions
Predicted = Low DIMER_Q9Y261:159:220_2a07_F_1 2a07 159-220 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
17-158PF08430Forkhead N-terminal regionNo overlap with loaded model regions
159-244PF00250Forkhead domainoverlaps 159-220
373-446PF09354HNF3 C-terminal domainNo overlap with loaded model regions