ModCRE DB

Transcription factor

Q9Y2D1 - ATF5

Cyclic AMP-dependent transcription factor ATF-5 (cAMP-dependent transcription factor ATF-5) (Activating transcription factor 5) (Transcription factor ATFx)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 282 aa

10 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0833.1 NN 70-40% JASPAR GGATGATGCAATA 62.8% identity Open · Scan
M02865_2.00 NN 70-40% CisBP AGGATGATGCAATC 61.4% identity Open · Scan
ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_1jnm_A_1 ModCRE Homology model GTTTAAAAACTTTTTTAAAA Region 210-265 · 1 3D model Open · Scan
DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_2h7h_B_1 ModCRE Homology model GTTGGTAAAGTTATAAAAA Region 210-265 · 1 3D model Open · Scan
DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_5t01_B_1 ModCRE Homology model TTTTAAAAACTTATAAAC Region 210-265 · 1 3D model Open · Scan
TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_1jnm_A_1 ModCRE Homology model TTTTTAAAAAGTTTTCTAAC Region 210-265 · 1 3D model Open · Scan
TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_1t2k_C_1 ModCRE Homology model AAAATTTTTAAACTTCTTCT Region 210-265 · 1 3D model Open · Scan
TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_2h7h_B_1 ModCRE Homology model TTTTTAAAACTTTATAAAC Region 210-265 · 1 3D model Open · Scan
TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_5t01_B_1 ModCRE Homology model GTTCATAACTTTTGAAAA Region 210-265 · 1 3D model Open · Scan
TFS_sp_Q9Y2D1_ATF5_HUMAN:213:265_1fos_F_1 ModCRE Homology model GTGAGTGCCTTTTGAAA Region 213-265 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 282 aa
210-265

Region 210-265 8 PWM

Residues
56 aa
Domains
PF00170 · bZIP transcription factor
3D models
10 active PDBs · 10 summary rows
Templates
1A02, 1FOS, 1JNM, 1S9K, 1T2K, 2H7H, 5T01
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 10 summary rows
Region 210-26510 models · 10 summary rows
Actions
Predicted = Low DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_1jnm_A_1 1jnm 210-265 View model · PDB
Predicted = Low DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_2h7h_B_1 2h7h 210-265 View model · PDB
Predicted = Low DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_5t01_B_1 5t01 210-265 View model · PDB
Predicted = Low DIMER_sp_Q9Y2D1_ATF5_HUMAN:213:261_1a02_J_1 1a02 213-261 View model · PDB
Predicted = Low DIMER_sp_Q9Y2D1_ATF5_HUMAN:213:261_1s9k_E_1 1s9k 213-261 View model · PDB
Predicted = Low TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_1jnm_A_1 1jnm 210-265 View model · PDB
Predicted = Low TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_1t2k_C_1 1t2k 210-265 View model · PDB
Predicted = Low TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_2h7h_B_1 2h7h 210-265 View model · PDB
Predicted = Low TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_5t01_B_1 5t01 210-265 View model · PDB
Predicted = Low TFS_sp_Q9Y2D1_ATF5_HUMAN:213:265_1fos_F_1 1fos 213-265 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 1a02 209:269 214,213 260,261 P:F,J · DNA:A,B 32.7% / 57.1% 88,94 View · PDB DIMER_sp_Q9Y2D1_ATF5_HUMAN:213:261_1a02_J_1
5 1s9k 209:269 214,213 260,261 P:D,E · DNA:A,B 32.7% / 57.1% 88,94 View · PDB DIMER_sp_Q9Y2D1_ATF5_HUMAN:213:261_1s9k_E_1
5 1fos 209:269 213 265 P:F · DNA:A,B 32.1% / 56.6% 92 View · PDB TFS_sp_Q9Y2D1_ATF5_HUMAN:213:265_1fos_F_1
1 5t01 209:269 210,210 265,265 P:A,B · DNA:C,D 30.4% / 57.1% 90,90 View · PDB DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_5t01_B_1
1 5t01 209:269 210,210 265,265 P:A,B · DNA:C,D 30.4% / 57.1% 90,90 View · PDB TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_5t01_B_1
2 1jnm 209:269 210,210 265,265 P:A,B · DNA:C,D 30.4% / 57.1% 100,98 View · PIR DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_1jnm_A_1
2 1t2k 209:269 210 265 P:C · DNA:E,F 30.4% / 57.1% 90 View · PDB TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_1t2k_C_1
3 2h7h 209:269 210,210 265,265 P:A,B · DNA:X,Y 30.4% / 57.1% 96,96 View · PIR DIMER_sp_Q9Y2D1_ATF5_HUMAN:210:265_2h7h_B_1
3 1jnm 209:269 210,210 265,265 P:A,B · DNA:C,D 30.4% / 57.1% 100,98 View · PDB TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_1jnm_A_1
4 2h7h 209:269 210,210 265,265 P:A,B · DNA:X,Y 30.4% / 57.1% 96,96 View · PDB TFS_sp_Q9Y2D1_ATF5_HUMAN:210:265_2h7h_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
209-266PF00170bZIP transcription factoroverlaps 210-265