ModCRE DB

Transcription factor

Q9Y2P7 - ZNF256

Zinc finger protein 256 (Bone marrow zinc finger 3) (BMZF-3)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 627 aa

98 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)91
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 65.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 61.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 61.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 60.5% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 59.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 59.2% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 59.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 58.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.8% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 57.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.5% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 56.8% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 56.3% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 56.3% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 56.1% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 55.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 55.9% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 55.7% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 55.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 55.6% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 55.5% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 55.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 55.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.9% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 54.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 54.7% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 54.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 54.6% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 54.5% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.1% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 54.1% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 54.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.0% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 54.0% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 54.0% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 53.9% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 53.9% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 53.9% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 53.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 53.7% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.6% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 53.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 53.1% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.0% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 53.0% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.0% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 52.9% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 52.8% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 52.8% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 52.7% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 52.6% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.6% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 52.2% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 52.2% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 52.2% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 52.1% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 51.6% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 51.5% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 51.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 51.5% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 51.2% identity Open · Scan
M01439_2.00 NN 70-40% CisBP TTACGCCACA 51.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.0% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.7% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 50.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.6% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 50.5% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 50.5% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 50.2% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.1% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 50.0% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 50.0% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 50.0% identity Open · Scan
ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q9Y2P7_ZN256_HUMAN:348:398_1llm_D_1 ModCRE Homology model TTGCGCGCGCAA Region 348-398 · 1 3D model Open · Scan
TFS_sp_Q9Y2P7_ZN256_HUMAN:489:598_5ei9_E_1 ModCRE Homology model GCCCCCGGCCGGGGTCCC Region 489-598 · 1 3D model Open · Scan
TFS_sp_Q9Y2P7_ZN256_HUMAN:75:199_5v3m_C_1 ModCRE Homology model GAAGGGGGGGTGGCCCCCCCCG Region 75-199 · 1 3D model Open · Scan
TFS_sp_Q9Y2P7_ZN256_HUMAN:75:199_5wjq_D_1 ModCRE Homology model GTAAAATGCCTGCGGAG Region 75-199 · 1 3D model Open · Scan
TFS_sp_Q9Y2P7_ZN256_HUMAN:87:191_5egb_A_1 ModCRE Homology model TTTTTCCCGAAGGGTTAA Region 87-191 · 1 3D model Open · Scan
TFS_sp_Q9Y2P7_ZN256_HUMAN:87:191_5ei9_E_1 ModCRE Homology model GGGGGGCCCGGAGGACG Region 87-191 · 1 3D model Open · Scan
TFS_sp_Q9Y2P7_ZN256_HUMAN:92:191_5eh2_F_1 ModCRE Homology model GGGGCCCACGGGTCCCTAG Region 92-191 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 627 aa
75-199
236-598

Region 75-199 5 PWM

Residues
125 aa
Domains
No overlapping PFAM annotation recorded
3D models
5 active PDBs
Templates
5EGB, 5EH2, 5EI9, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models

Region 236-598 2 PWM

Residues
363 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF23561 · C2H2 zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 75-1995 models
Actions
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:75:199_5v3m_C_1 5v3m 75-199 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:75:199_5wjq_D_1 5wjq 75-199 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:87:191_5egb_A_1 5egb 87-191 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:87:191_5ei9_E_1 5ei9 87-191 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:92:191_5eh2_F_1 5eh2 92-191 View model · PDB
Region 236-5987 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q9Y2P7_ZN256_HUMAN:348:398_1llm_D_1 1llm 348-398 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:236:514_5wjq_D_1 5wjq 236-514 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:267:565_7w1m_H_1 7w1m 267-565 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:322:598_5v3j_E_1 5v3j 322-598 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:322:598_5v3m_C_1 5v3m 322-598 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:444:597_2i13_A_1 2i13 444-597 View model · PDB
Predicted = Low TFS_sp_Q9Y2P7_ZN256_HUMAN:489:598_5ei9_E_1 5ei9 489-598 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 236:623 444 597 P:A · DNA:C,D 56.5% / 69.5% 100 View · PDB TFS_sp_Q9Y2P7_ZN256_HUMAN:444:597_2i13_A_1
1 5wjq 236:623 236 514 P:D · DNA:A,B 52.0% / 67.0% 99 View · PDB TFS_sp_Q9Y2P7_ZN256_HUMAN:236:514_5wjq_D_1
2 5v3m 236:623 322 598 P:C · DNA:A,B 49.1% / 68.2% 100 View · PDB TFS_sp_Q9Y2P7_ZN256_HUMAN:322:598_5v3m_C_1
3 5v3j 236:623 322 598 P:E · DNA:A,B 49.1% / 68.2% 100 View · PDB TFS_sp_Q9Y2P7_ZN256_HUMAN:322:598_5v3j_E_1
1 1llm 236:623 348,348 398,398 P:C,D · DNA:A,B 41.2% / 62.7% 58,60 View · PDB DIMER_sp_Q9Y2P7_ZN256_HUMAN:348:398_1llm_D_1
5 7w1m 236:623 267 565 P:H · DNA:F,G 34.4% / 49.4% 92 View · PDB TFS_sp_Q9Y2P7_ZN256_HUMAN:267:565_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-54PF01352KRAB boxNo overlap with loaded model regions
239-261PF00096Zinc finger, C2H2 typeoverlaps 236-598
267-289PF00096Zinc finger, C2H2 typeoverlaps 236-598
296-321PF23561C2H2 zinc fingeroverlaps 236-598
323-345PF00096Zinc finger, C2H2 typeoverlaps 236-598
351-373PF00096Zinc finger, C2H2 typeoverlaps 236-598
379-401PF00096Zinc finger, C2H2 typeoverlaps 236-598
407-429PF00096Zinc finger, C2H2 typeoverlaps 236-598
435-457PF00096Zinc finger, C2H2 typeoverlaps 236-598
463-485PF00096Zinc finger, C2H2 typeoverlaps 236-598
491-513PF00096Zinc finger, C2H2 typeoverlaps 236-598
519-541PF00096Zinc finger, C2H2 typeoverlaps 236-598
547-569PF00096Zinc finger, C2H2 typeoverlaps 236-598
575-597PF00096Zinc finger, C2H2 typeoverlaps 236-598
603-625PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions