ModCRE DB

Transcription factor

Q9Y2Q1 - ZNF257

Zinc finger protein 257 (Bone marrow zinc finger 4) (BMZF-4)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 563 aa

78 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
MA1710.1 Known JASPAR GAGAGGCAAGGG Direct PWM Open · Scan
MA1710.2 Known JASPAR GAGGCAAGGG Direct PWM Open · Scan
M07719_2.00 Known CisBP CAGAGGCAA Direct PWM Open · Scan
M08379_2.00 Known CisBP GAGGCAAGAGCCG Direct PWM Open · Scan
M08950_2.00 Known CisBP AGAGGCAAGAGC Direct PWM Open · Scan
ZN257_HUMAN.H11MO.0.C Known HOCOMOCO GCTCTTGCCTCT Direct PWM Open · Scan
Nearest Neighbor (>70%)7
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70+% CisBP ACGTCCTCT 78.8% identity Open · Scan
M08381_2.00 NN 70+% CisBP ACATTTTGTCCTCCTAGTCCT 71.8% identity Open · Scan
M07715_2.00 NN 70+% CisBP CCGCCGCCGCCGTGG 71.4% identity Open · Scan
M08295_2.00 NN 70+% CisBP CTGCTGGAATCTCCA 70.9% identity Open · Scan
M08921_2.00 NN 70+% CisBP CCTCATTCTTCTTGGACATG 70.8% identity Open · Scan
M08934_2.00 NN 70+% CisBP GCTGTACCTGCTTATTAGGC 70.5% identity Open · Scan
M07714_2.00 NN 70+% CisBP AGCCCATTGGGGCCTATGCCC 70.1% identity Open · Scan
Nearest Neighbor (70% - 40%)65
MotifPredictionSourceDNA bindingSupportLogoActions
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 68.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 66.3% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 65.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.7% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 63.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 63.5% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 62.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 62.3% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.8% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 59.5% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 58.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 58.6% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 58.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.9% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 57.3% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 57.2% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 55.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.7% identity Open · Scan
M05847_2.00 NN 70-40% CisBP AGACCTACTATGC 54.4% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 54.3% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 54.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.1% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 53.9% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.5% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.1% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 52.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 52.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.7% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.6% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 52.1% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 51.6% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 51.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 51.2% identity Open · Scan
MA1516.1 NN 70-40% JASPAR GACCACGCCCA 51.2% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 51.1% identity Open · Scan
M09515_2.00 NN 70-40% CisBP CCCGCCCACGCA 51.1% identity Open · Scan
MA0472.1 NN 70-40% JASPAR CCCCCGCCCACGCAC 51.1% identity Open · Scan
MA0472.2 NN 70-40% JASPAR ACGCCCACGCA 51.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 51.0% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.9% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.9% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 50.8% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 50.3% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 50.3% identity Open · Scan
M00143_2.00 NN 70-40% CisBP CCCCCCCACG 50.0% identity Open · Scan
M00224_2.00 NN 70-40% CisBP CCCGCCCC 50.0% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 50.0% identity Open · Scan
MA0753.1 NN 70-40% JASPAR CCCCCCCCAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 563 aa
201-482

Region 201-482 0 PWM

Residues
282 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 201-4821 model
Actions
Predicted = Low TFS_Q9Y2Q1:201:482_5v3j_E_1 5v3j 201-482 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-44PF01352KRAB boxNo overlap with loaded model regions
173-195PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
201-223PF00096Zinc finger, C2H2 typeoverlaps 201-482
229-251PF00096Zinc finger, C2H2 typeoverlaps 201-482
257-279PF00096Zinc finger, C2H2 typeoverlaps 201-482
316-338PF00096Zinc finger, C2H2 typeoverlaps 201-482
344-366PF00096Zinc finger, C2H2 typeoverlaps 201-482
372-394PF00096Zinc finger, C2H2 typeoverlaps 201-482
431-453PF00096Zinc finger, C2H2 typeoverlaps 201-482
459-481PF00096Zinc finger, C2H2 typeoverlaps 201-482
487-509PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
515-537PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions