ModCRE DB

Transcription factor

Q9Y2V3 - RAX

Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 346 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
MA0718.1 Known JASPAR GCCAATTAAC Direct PWM Open · Scan
MA0718.2 Known JASPAR CAATTA Direct PWM Open · Scan
M03149_2.00 Known CisBP GTTAATTGGC Direct PWM Open · Scan
M05142_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M05143_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M05144_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 346 aa
135-194

Region 135-194 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 135-1941 model
Actions
Predicted = Low DIMER_Q9Y2V3:135:194_1fjl_A_1 1fjl 135-194 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
137-193PF00046Homeodomainoverlaps 135-194
319-336PF03826OAR motifNo overlap with loaded model regions