ModCRE DB

Transcription factor

Q9Y5A5

Putative kruppel-related zinc finger protein NY-REN-23 antigen

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 547 aa

45 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)40
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.9% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.9% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 60.0% identity Open · Scan
M08525_2.00 NN 70-40% CisBP CCCCGCA 60.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 59.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 59.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 59.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 59.7% identity Open · Scan
M08541_2.00 NN 70-40% CisBP CTAAGCCAC 59.2% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 58.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.3% identity Open · Scan
M01470_2.00 NN 70-40% CisBP CCCCCCGC 56.8% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 56.3% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 55.8% identity Open · Scan
M02903_2.00 NN 70-40% CisBP ATGCCACGCCCCTTTTTG 54.9% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 54.8% identity Open · Scan
M08246_2.00 NN 70-40% CisBP GCCCCACCCA 54.5% identity Open · Scan
MA1511.1 NN 70-40% JASPAR GCCACACCCCC 54.5% identity Open · Scan
M01529_2.00 NN 70-40% CisBP CCCCGCATT 54.3% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 53.3% identity Open · Scan
M01186_2.00 NN 70-40% CisBP TACCCCGCAC 52.8% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.1% identity Open · Scan
M08528_2.00 NN 70-40% CisBP ACCCCACTTTTTTG 52.0% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 51.7% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 51.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 51.3% identity Open · Scan
M01447_2.00 NN 70-40% CisBP TACCCCTGA 51.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 51.0% identity Open · Scan
M10391_2.00 NN 70-40% CisBP TACCCCACATTTATTTA 50.9% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 50.7% identity Open · Scan
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 50.0% identity Open · Scan
M01042_2.00 NN 70-40% CisBP TGGGACCTGA 50.0% identity Open · Scan
M01440_2.00 NN 70-40% CisBP TACGCCAC 50.0% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 50.0% identity Open · Scan
M02667_2.00 NN 70-40% CisBP TATTATCTTATCTT 50.0% identity Open · Scan
M08513_2.00 NN 70-40% CisBP GGACCCT 50.0% identity Open · Scan
MA0029.1 NN 70-40% JASPAR AAGATAAGATAACA 50.0% identity Open · Scan
MA1516.1 NN 70-40% JASPAR GACCACGCCCA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:296:543_5v3j_E_1 ModCRE Homology model GGCCGGGGGGGGGCCCGGGGGGGGAC Region 296-543 · 1 3D model Open · Scan
TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:296:543_5v3m_C_1 ModCRE Homology model GGGGGGGGCCCGGGGGGGCCGGGGCC Region 296-543 · 1 3D model Open · Scan
TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:297:543_5wjq_D_1 ModCRE Homology model GGGGGCCGCGGCGGGGGGCGCGGGTCCC Region 297-543 · 1 3D model Open · Scan
TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:377:486_5ei9_E_1 ModCRE Homology model AGGGGGGCCCGGGGCCC Region 377-486 · 1 3D model Open · Scan
TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:389:542_2i13_A_1 ModCRE Homology model ATGCAGCGGCTCTAGTACTTT Region 389-542 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 547 aa
296-543

Region 296-543 5 PWM

Residues
248 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 296-5436 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q9Y5A5_Q9Y5A5_HUMAN:489:539_1llm_C_1 1llm 489-539 View model · PDB
Predicted = Low TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:296:543_5v3j_E_1 5v3j 296-543 View model · PDB
Predicted = Low TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:296:543_5v3m_C_1 5v3m 296-543 View model · PDB
Predicted = Low TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:297:543_5wjq_D_1 5wjq 297-543 View model · PDB
Predicted = Low TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:377:486_5ei9_E_1 5ei9 377-486 View model · PDB
Predicted = Low TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:389:542_2i13_A_1 2i13 389-542 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 294:547 389 542 P:A · DNA:C,D 55.2% / 63.6% 100 View · PDB TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:389:542_2i13_A_1
1 1llm 294:547 489,489 539,539 P:C,D · DNA:A,B 51.0% / 66.7% 58,60 View · PDB DIMER_tr_Q9Y5A5_Q9Y5A5_HUMAN:489:539_1llm_C_1
5 5ei9 294:547 377 486 P:E · DNA:A,B 50.9% / 65.5% 99 View · PDB TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:377:486_5ei9_E_1
1 5wjq 294:547 297 543 P:D · DNA:A,B 43.7% / 57.9% 87 View · PDB TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:297:543_5wjq_D_1
2 5v3m 294:547 296 543 P:C · DNA:A,B 41.5% / 56.9% 89 View · PDB TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:296:543_5v3m_C_1
3 5v3j 294:547 296 543 P:E · DNA:A,B 41.5% / 56.9% 89 View · PDB TFS_tr_Q9Y5A5_Q9Y5A5_HUMAN:296:543_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
135-176PF01352KRAB boxNo overlap with loaded model regions
296-318PF00096Zinc finger, C2H2 typeoverlaps 296-543
324-346PF00096Zinc finger, C2H2 typeoverlaps 296-543
380-402PF00096Zinc finger, C2H2 typeoverlaps 296-543
408-430PF00096Zinc finger, C2H2 typeoverlaps 296-543
464-486PF00096Zinc finger, C2H2 typeoverlaps 296-543
493-514PF00096Zinc finger, C2H2 typeoverlaps 296-543
520-542PF00096Zinc finger, C2H2 typeoverlaps 296-543