ModCRE DB

Transcription factor

Q9Y618 - NCOR2

Nuclear receptor corepressor 2 (N-CoR2) (CTG repeat protein 26) (SMAP270) (Silencing mediator of retinoic acid and thyroid hormone receptor) (SMRT) (T3 receptor-associating factor) (TRAC) (Thyroid-, retinoic-acid-receptor-associated corepressor)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 2514 aa

5 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q9Y618_NCOR2_HUMAN:611:656_3osf_A_1 ModCRE Homology model CACATAGTTCTTT Region 611-656 · 1 3D model Open · Scan
TFS_sp_Q9Y618_NCOR2_HUMAN:611:656_3osg_A_1 ModCRE Homology model CCGTTTTAGACT Region 611-656 · 1 3D model Open · Scan
TFS_sp_Q9Y618_NCOR2_HUMAN:612:668_6vyp_L_1 ModCRE Homology model GGTTTATTTTAAAAAC Region 612-668 · 1 3D model Open · Scan
TFS_sp_Q9Y618_NCOR2_HUMAN:612:668_6vyp_N_1 ModCRE Homology model TTTTTAAAAAAATTA Region 612-668 · 1 3D model Open · Scan
TFS_sp_Q9Y618_NCOR2_HUMAN:615:651_3zqc_A_1 ModCRE Homology model AACAGTCCGTTAAGGG Region 615-651 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 2514 aa
611-668

Region 611-668 5 PWM

Residues
58 aa
Domains
PF00249 · Myb-like DNA-binding domain
3D models
5 active PDBs · 5 summary rows
Templates
3OSF, 3OSG, 3ZQC, 6VYP
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 611-6685 models · 5 summary rows
Actions
Predicted = Low TFS_sp_Q9Y618_NCOR2_HUMAN:611:656_3osf_A_1 3osf 611-656 View model · PDB
Predicted = Low TFS_sp_Q9Y618_NCOR2_HUMAN:611:656_3osg_A_1 3osg 611-656 View model · PDB
Predicted = Low TFS_sp_Q9Y618_NCOR2_HUMAN:612:668_6vyp_L_1 6vyp 612-668 View model · PDB
Predicted = Low TFS_sp_Q9Y618_NCOR2_HUMAN:612:668_6vyp_N_1 6vyp 612-668 View model · PDB
Predicted = Low TFS_sp_Q9Y618_NCOR2_HUMAN:615:651_3zqc_A_1 3zqc 615-651 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6vyp 611:668 612 668 P:N · DNA:I,J 43.9% / 77.2% 42 View · PDB TFS_sp_Q9Y618_NCOR2_HUMAN:612:668_6vyp_N_1
2 6vyp 611:668 612 668 P:L · DNA:I,J 43.9% / 77.2% 42 View · PDB TFS_sp_Q9Y618_NCOR2_HUMAN:612:668_6vyp_L_1
5 3zqc 611:668 615 651 P:A · DNA:B,C 40.5% / 59.5% 31 View · PDB TFS_sp_Q9Y618_NCOR2_HUMAN:615:651_3zqc_A_1
3 3osf 611:668 611 656 P:A · DNA:B,C 30.4% / 56.5% 44 View · PDB TFS_sp_Q9Y618_NCOR2_HUMAN:611:656_3osf_A_1
4 3osg 611:668 611 656 P:A · DNA:B,C 30.4% / 56.5% 41 View · PDB TFS_sp_Q9Y618_NCOR2_HUMAN:611:656_3osg_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
142-229PF15784G-protein pathway suppressor 2-interacting domainNo overlap with loaded model regions
431-471PF00249Myb-like DNA-binding domainNo overlap with loaded model regions
614-657PF00249Myb-like DNA-binding domainoverlaps 611-668