ModCRE DB

Transcription factor

Q9Y651 - SOX21

Transcription factor SOX-21 (SOX-A)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 276 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0866.1 Known JASPAR AACAATGGTAGTGTT Direct PWM Open · Scan
M03497_2.00 Known CisBP AACAATGGTAGTGTT Direct PWM Open · Scan
M03498_2.00 Known CisBP AACAATGTGCAGTGTT Direct PWM Open · Scan
M03499_2.00 Known CisBP TCAATGTTATTGA Direct PWM Open · Scan
M03500_2.00 Known CisBP TGAATGTTATTCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 276 aa
6-78

Region 6-78 0 PWM

Residues
73 aa
Domains
PF00505 · HMG (high mobility group) box PF12336 · SOX transcription factor
3D models
1 active PDB
Templates
1HRY
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 6-781 model
Actions
Predicted = Low TFS_Q9Y651:6:78_1hry_A_1 1hry 6-78 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-76PF00505HMG (high mobility group) boxoverlaps 6-78
77-98PF12336SOX transcription factoroverlaps 6-78