ModCRE DB

Transcription factor

S4R3U0 - ZNF559

Zinc finger protein 559

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 524 aa

64 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)59
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 58.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 57.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.6% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 56.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.0% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 54.0% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 53.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 52.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 52.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 52.6% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.2% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.1% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 52.0% identity Open · Scan
MA0741.1 NN 70-40% JASPAR GCCACGCCCCC 51.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
MA0516.1 NN 70-40% JASPAR GCCCCGCCCCCTCCC 51.7% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 51.6% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 51.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.3% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.1% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 50.8% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.6% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 50.5% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.4% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 50.2% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 50.0% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 50.0% identity Open · Scan
M09008_2.00 NN 70-40% CisBP CCCGGCCCCACCCT 50.0% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 50.0% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.0% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_S4R3U0_S4R3U0_HUMAN:337:385_1llm_D_1 ModCRE Homology model TCCGGGCCCGAA Region 337-385 · 1 3D model Open · Scan
TFS_tr_S4R3U0_S4R3U0_HUMAN:194:474_5wjq_D_1 ModCRE Homology model CCAACCGCCCCCCCCCACCCATCCCCCC Region 194-474 · 1 3D model Open · Scan
TFS_tr_S4R3U0_S4R3U0_HUMAN:254:521_5v3j_E_1 ModCRE Homology model CACCTGTGCCCGGGGGTTTGGTACA Region 254-521 · 1 3D model Open · Scan
TFS_tr_S4R3U0_S4R3U0_HUMAN:254:521_5v3m_C_1 ModCRE Homology model CGGACCCCACCCGCCCCCGCCCCCGA Region 254-521 · 1 3D model Open · Scan
TFS_tr_S4R3U0_S4R3U0_HUMAN:320:473_2i13_A_1 ModCRE Homology model AAAGACACACTAAAGCTAAAA Region 320-473 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 524 aa
194-521

Region 194-521 5 PWM

Residues
328 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 194-5216 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_S4R3U0_S4R3U0_HUMAN:337:385_1llm_D_1 1llm 337-385 View model · PDB
Predicted = Low TFS_tr_S4R3U0_S4R3U0_HUMAN:194:474_5wjq_D_1 5wjq 194-474 View model · PDB
Predicted = Low TFS_tr_S4R3U0_S4R3U0_HUMAN:217:497_7w1m_H_1 7w1m 217-497 View model · PDB
Predicted = Low TFS_tr_S4R3U0_S4R3U0_HUMAN:254:521_5v3j_E_1 5v3j 254-521 View model · PDB
Predicted = Low TFS_tr_S4R3U0_S4R3U0_HUMAN:254:521_5v3m_C_1 5v3m 254-521 View model · PDB
Predicted = Low TFS_tr_S4R3U0_S4R3U0_HUMAN:320:473_2i13_A_1 2i13 320-473 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 194:521 320 473 P:A · DNA:C,D 51.3% / 70.8% 100 View · PDB TFS_tr_S4R3U0_S4R3U0_HUMAN:320:473_2i13_A_1
1 1llm 194:521 337,337 385,385 P:C,D · DNA:A,B 51.0% / 67.3% 56,57 View · PDB DIMER_tr_S4R3U0_S4R3U0_HUMAN:337:385_1llm_D_1
2 5v3m 194:521 254 521 P:C · DNA:A,B 48.5% / 68.5% 96 View · PDB TFS_tr_S4R3U0_S4R3U0_HUMAN:254:521_5v3m_C_1
3 5v3j 194:521 254 521 P:E · DNA:A,B 48.5% / 68.5% 96 View · PDB TFS_tr_S4R3U0_S4R3U0_HUMAN:254:521_5v3j_E_1
1 5wjq 194:521 194 474 P:D · DNA:A,B 47.0% / 64.4% 100 View · PDB TFS_tr_S4R3U0_S4R3U0_HUMAN:194:474_5wjq_D_1
5 7w1m 194:521 217 497 P:H · DNA:F,G 34.5% / 50.0% 87 View · PDB TFS_tr_S4R3U0_S4R3U0_HUMAN:217:497_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
227-249PF00096Zinc finger, C2H2 typeoverlaps 194-521
283-305PF00096Zinc finger, C2H2 typeoverlaps 194-521
311-333PF00096Zinc finger, C2H2 typeoverlaps 194-521
339-361PF00096Zinc finger, C2H2 typeoverlaps 194-521
367-389PF00096Zinc finger, C2H2 typeoverlaps 194-521
395-417PF00096Zinc finger, C2H2 typeoverlaps 194-521
423-445PF00096Zinc finger, C2H2 typeoverlaps 194-521
451-473PF00096Zinc finger, C2H2 typeoverlaps 194-521
479-501PF00096Zinc finger, C2H2 typeoverlaps 194-521