ModCRE DB

Transcription factor

S4R3U5 - FOXN4

Forkhead box N4

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 84 aa

43 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M01011_2.00 NN 70+% CisBP AAGGACGCGA 92.4% identity Open · Scan
Nearest Neighbor (70% - 40%)42
MotifPredictionSourceDNA bindingSupportLogoActions
M04835_2.00 NN 70-40% CisBP ACGCGTCGTTACGACGCGT 68.0% identity Open · Scan
M01227_2.00 NN 70-40% CisBP GTAAACAA 67.9% identity Open · Scan
MA1489.1 NN 70-40% JASPAR GTAAACAA 67.9% identity Open · Scan
M03745_2.00 NN 70-40% CisBP ATGTAAACAAA 67.3% identity Open · Scan
M01016_2.00 NN 70-40% CisBP TGGACGCTAA 64.0% identity Open · Scan
M01015_2.00 NN 70-40% CisBP ACGACGCAAA 58.8% identity Open · Scan
M01008_2.00 NN 70-40% CisBP AGCAAACA 58.3% identity Open · Scan
M08557_2.00 NN 70-40% CisBP AAAATTGACGCAAATTCGTT 56.8% identity Open · Scan
M01987_2.00 NN 70-40% CisBP GTAAACAAA 56.2% identity Open · Scan
M09104_2.00 NN 70-40% CisBP CCTTGTTTACTTT 56.0% identity Open · Scan
MA0030.1 NN 70-40% JASPAR CAAACGTAAACAAT 56.0% identity Open · Scan
MA1606.1 NN 70-40% JASPAR ATGTAAACAAA 56.0% identity Open · Scan
M03012_2.00 NN 70-40% CisBP GTAAACA 55.0% identity Open · Scan
M01004_2.00 NN 70-40% CisBP ACGACGCAAA 54.9% identity Open · Scan
M10528_2.00 NN 70-40% CisBP ATAATAATATTTTT 54.2% identity Open · Scan
MA0614.1 NN 70-40% JASPAR GTAAACAA 54.2% identity Open · Scan
M03046_2.00 NN 70-40% CisBP GTAAACAA 54.1% identity Open · Scan
M03058_2.00 NN 70-40% CisBP GTAAACATAAACA 54.1% identity Open · Scan
MA0851.1 NN 70-40% JASPAR AAAAAGTAAACAAACAC 54.1% identity Open · Scan
M01017_2.00 NN 70-40% CisBP AAAAACAA 54.0% identity Open · Scan
M01979_2.00 NN 70-40% CisBP AAAAACAA 53.8% identity Open · Scan
M09085_2.00 NN 70-40% CisBP GCAAAGCAAACA 53.8% identity Open · Scan
M09099_2.00 NN 70-40% CisBP GCAAAGCAAACA 53.8% identity Open · Scan
M00664_2.00 NN 70-40% CisBP ATAAACAA 53.6% identity Open · Scan
M05866_2.00 NN 70-40% CisBP GTAAACAAAT 52.3% identity Open · Scan
M09101_2.00 NN 70-40% CisBP AGTAAACAA 52.3% identity Open · Scan
MA0593.1 NN 70-40% JASPAR AAGTAAACAAA 52.3% identity Open · Scan
M01002_2.00 NN 70-40% CisBP TAAACAA 52.1% identity Open · Scan
M03034_2.00 NN 70-40% CisBP GTAAACA 51.2% identity Open · Scan
M04827_2.00 NN 70-40% CisBP GTAATGTAAACAA 51.2% identity Open · Scan
MA0042.1 NN 70-40% JASPAR GGATGTTTGTTT 51.2% identity Open · Scan
M00044_2.00 NN 70-40% CisBP GGTAAACAA 50.0% identity Open · Scan
M00793_2.00 NN 70-40% CisBP TGTAAACAA 50.0% identity Open · Scan
M01983_2.00 NN 70-40% CisBP TGTTTACATA 50.0% identity Open · Scan
M03741_2.00 NN 70-40% CisBP TTATGTAAACAAT 50.0% identity Open · Scan
M03743_2.00 NN 70-40% CisBP TATGTAAATATTTACATA 50.0% identity Open · Scan
M04857_2.00 NN 70-40% CisBP ATATAAACATAAATAAA 50.0% identity Open · Scan
M08115_2.00 NN 70-40% CisBP AAGTAAACAGAA 50.0% identity Open · Scan
MA0481.1 NN 70-40% JASPAR CAAAAGTAAACAAAG 50.0% identity Open · Scan
MA0845.1 NN 70-40% JASPAR TATGTAAATAT 50.0% identity Open · Scan
MA0852.1 NN 70-40% JASPAR AAAATGTAAACAAACAG 50.0% identity Open · Scan
MA0852.2 NN 70-40% JASPAR AATGTAAACAAGGC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 84 aa
11-52

Region 11-52 0 PWM

Residues
42 aa
Domains
PF00250 · Forkhead domain
3D models
1 active PDB
Templates
3QRF
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 11-521 model
Actions
Predicted = Low DIMER_S4R3U5:11:52_3qrf_G_1 3qrf 11-52 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-53PF00250Forkhead domainoverlaps 11-52