Region 540-621 0 PWM
- Residues
- 82 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 1 active PDB
- Templates
- 1J46
- Sources
- Structure model
Transcription factor
T2CYZ2 - SOX5
Transcription factor SOX-5 variant 6
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 750 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M11309_2.00 | Known | CisBP | TTAACAATAC | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
750 aa
540-621
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 540-6211 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_T2CYZ2:540:621_1j46_A_1 | 1j46 | 540-621 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 543-611 | PF00505 | HMG (high mobility group) box | overlaps 540-621 |