ModCRE DB

Transcription factor

V5QRV9 - HOXB13

Homeobox protein Hox-B13 variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 284 aa

38 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0901.1 NN 70+% JASPAR CCAATAAAAC 99.6% identity Open · Scan
M00505_2.00 NN 70+% CisBP TTTTATGAGC 92.6% identity Open · Scan
Nearest Neighbor (70% - 40%)36
MotifPredictionSourceDNA bindingSupportLogoActions
M00508_2.00 NN 70-40% CisBP TTTTATGACC 59.0% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 59.0% identity Open · Scan
MA0651.1 NN 70-40% JASPAR GGTCGTAAAAT 58.3% identity Open · Scan
MA0650.1 NN 70-40% JASPAR CCAATAAAAA 56.0% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 55.5% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 55.3% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 55.0% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 54.3% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 54.3% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 54.0% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 54.0% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 53.4% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 53.4% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 53.4% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 53.3% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 53.3% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 52.6% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 52.6% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 52.6% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 52.4% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 51.7% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 51.7% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 50.8% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 50.0% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 50.0% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 50.0% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 50.0% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 50.0% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 50.0% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 50.0% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 50.0% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 50.0% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 50.0% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 50.0% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 50.0% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 284 aa
217-273

Region 217-273 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 217-2731 model
Actions
Predicted = Low DIMER_V5QRV9:217:273_5zjr_A_1 5zjr 217-273 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-123PF12284Hox protein A13 N terminalNo overlap with loaded model regions
217-273PF00046Homeodomainoverlaps 217-273