ModCRE DB

Transcription factor

W5S2M5

Type 1 PAX3-MAML3 fusion protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 185 aa

109 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)32
MotifPredictionSourceDNA bindingSupportLogoActions
M00354_2.00 NN 70+% CisBP CCGATTA 99.3% identity Open · Scan
MA0780.1 NN 70+% JASPAR TAATCGATTA 99.3% identity Open · Scan
M06555_2.00 NN 70+% CisBP AGTAACAGT 87.1% identity Open · Scan
MA0681.1 NN 70+% JASPAR TAATTTAATTA 81.0% identity Open · Scan
MA0713.1 NN 70+% JASPAR TAATTTAATTA 81.0% identity Open · Scan
M06326_2.00 NN 70+% CisBP TTAATT 78.3% identity Open · Scan
MA1481.1 NN 70+% JASPAR CTAATTAC 77.7% identity Open · Scan
M03888_2.00 NN 70+% CisBP GCGTGACGAATC 77.5% identity Open · Scan
M06322_2.00 NN 70+% CisBP TTAATTA 76.9% identity Open · Scan
M05245_2.00 NN 70+% CisBP GTAATTAG 73.0% identity Open · Scan
M05367_2.00 NN 70+% CisBP TTAATTAG 72.9% identity Open · Scan
MA0630.1 NN 70+% JASPAR TTAATTGG 72.9% identity Open · Scan
M03892_2.00 NN 70+% CisBP GATAATTGATTATC 72.3% identity Open · Scan
M00402_2.00 NN 70+% CisBP TAATTAG 71.7% identity Open · Scan
M03278_2.00 NN 70+% CisBP TTAATTTAATTAT 71.7% identity Open · Scan
M04917_2.00 NN 70+% CisBP GTAATTAG 71.7% identity Open · Scan
M10741_2.00 NN 70+% CisBP AACTAATTACCATTATCG 71.7% identity Open · Scan
MA0634.1 NN 70+% JASPAR TCTAATTAAA 71.7% identity Open · Scan
MA0853.1 NN 70+% JASPAR CGCATTAATTAATTACC 71.7% identity Open · Scan
MA0854.1 NN 70+% JASPAR CGAATTAATTAATCACC 71.7% identity Open · Scan
M03076_2.00 NN 70+% CisBP TTAATTAAATTAA 71.4% identity Open · Scan
MA0874.1 NN 70+% JASPAR GTCCATTAATTAATGGA 71.4% identity Open · Scan
M00417_2.00 NN 70+% CisBP GCTAATTA 71.0% identity Open · Scan
M03121_2.00 NN 70+% CisBP TTAATTGG 71.0% identity Open · Scan
M06370_2.00 NN 70+% CisBP TTAATTA 71.0% identity Open · Scan
MA0075.1 NN 70+% JASPAR AATTA 71.0% identity Open · Scan
MA0075.3 NN 70+% JASPAR CTAATTAA 71.0% identity Open · Scan
MA0716.1 NN 70+% JASPAR CTAATTAA 71.0% identity Open · Scan
M05419_2.00 NN 70+% CisBP CGATTAGTCACGGTT 70.7% identity Open · Scan
MA0680.1 NN 70+% JASPAR TAATCGATTA 70.7% identity Open · Scan
M02082_2.00 NN 70+% CisBP ATTGTACAAT 70.2% identity Open · Scan
M03855_2.00 NN 70+% CisBP TAATTAGATTA 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)77
MotifPredictionSourceDNA bindingSupportLogoActions
M03204_2.00 NN 70-40% CisBP TTAATTGG 69.7% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 69.7% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 69.2% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 69.2% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 68.4% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 68.0% identity Open · Scan
M02097_2.00 NN 70-40% CisBP AATTAATTAG 67.7% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 66.6% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 66.6% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 66.6% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 66.6% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 66.6% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 66.6% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 65.7% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 65.7% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 65.7% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 64.8% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 64.8% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 64.8% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 64.1% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 64.1% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 63.8% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 63.8% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 63.1% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 63.1% identity Open · Scan
M09569_2.00 NN 70-40% CisBP GTTAATCCCT 62.5% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 62.1% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 61.9% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 61.8% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 61.5% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 61.5% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 61.1% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 60.5% identity Open · Scan
M03250_2.00 NN 70-40% CisBP TTAATCCG 60.5% identity Open · Scan
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 60.5% identity Open · Scan
M09681_2.00 NN 70-40% CisBP CTAATCCG 60.5% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 60.5% identity Open · Scan
MA0711.1 NN 70-40% JASPAR TTAATCCG 60.5% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 60.0% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 60.0% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 60.0% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 59.4% identity Open · Scan
M06489_2.00 NN 70-40% CisBP TTAATTA 59.2% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 59.0% identity Open · Scan
MA0714.1 NN 70-40% JASPAR CTTAATCCC 59.0% identity Open · Scan
MA0710.1 NN 70-40% JASPAR GCTAATTAGC 58.6% identity Open · Scan
MA0884.1 NN 70-40% JASPAR CTAATTTAATCAA 58.0% identity Open · Scan
M02195_2.00 NN 70-40% CisBP CCTAATCCGC 57.5% identity Open · Scan
M00679_2.00 NN 70-40% CisBP TTAATCCC 57.1% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 57.1% identity Open · Scan
M09573_2.00 NN 70-40% CisBP GTTAATGA 56.5% identity Open · Scan
MA0674.1 NN 70-40% JASPAR GTAATTAA 56.5% identity Open · Scan
M02209_2.00 NN 70-40% CisBP AGCGGATATA 56.4% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 56.0% identity Open · Scan
M09153_2.00 NN 70-40% CisBP GTTAATCCCCT 55.8% identity Open · Scan
MA0712.1 NN 70-40% JASPAR TTAATCCT 55.8% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 55.3% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 55.3% identity Open · Scan
M02142_2.00 NN 70-40% CisBP AATCGATC 55.1% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 54.2% identity Open · Scan
M02221_2.00 NN 70-40% CisBP CTTAATTGGT 54.2% identity Open · Scan
MA0125.1 NN 70-40% JASPAR TAATTGGT 54.2% identity Open · Scan
M00674_2.00 NN 70-40% CisBP TTAATCCC 54.0% identity Open · Scan
M00349_2.00 NN 70-40% CisBP CTAATTAGC 53.8% identity Open · Scan
M06290_2.00 NN 70-40% CisBP TTTAATTA 53.8% identity Open · Scan
MA0068.1 NN 70-40% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 53.8% identity Open · Scan
MA0068.2 NN 70-40% JASPAR CTAATTAG 53.8% identity Open · Scan
MA0119.1 NN 70-40% JASPAR TGGCACCATGCCAA 53.8% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 53.5% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 53.0% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 52.7% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 52.6% identity Open · Scan
M08135_2.00 NN 70-40% CisBP TAATTTAATCA 51.2% identity Open · Scan
MA0468.1 NN 70-40% JASPAR TAATTTAATCA 51.2% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 50.0% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 50.0% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 185 aa
11-38

Region 11-38 0 PWM

Residues
28 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
4QTR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 11-381 model
Actions
Predicted = Low DIMER_W5S2M5:11:38_4qtr_B_1 4qtr 11-38 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-38PF00046Homeodomainoverlaps 11-38
109-153PF12360Paired box protein 7No overlap with loaded model regions