ModCRE DB

Transcription factor

X5D304 - TBX6

T-box transcription factor TBX6

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 227 aa

28 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA1567.1 NN 70+% JASPAR GAGGTGTGAA 99.5% identity Open · Scan
Nearest Neighbor (70% - 40%)27
MotifPredictionSourceDNA bindingSupportLogoActions
M02498_2.00 NN 70-40% CisBP AGGTGTCA 60.1% identity Open · Scan
MA0689.1 NN 70-40% JASPAR TAGGTGTGAAG 57.5% identity Open · Scan
M03993_2.00 NN 70-40% CisBP GAGGTGTGAA 57.3% identity Open · Scan
MA0801.1 NN 70-40% JASPAR AGGTGTGA 57.1% identity Open · Scan
M09650_2.00 NN 70-40% CisBP CCTGTCAACACC 56.6% identity Open · Scan
M05798_2.00 NN 70-40% CisBP AAAGGTGTGAAA 56.0% identity Open · Scan
M09427_2.00 NN 70-40% CisBP TTAGCAGGGAGGTGTGAAAT 56.0% identity Open · Scan
MA0009.1 NN 70-40% JASPAR CTAGGTGTGAA 56.0% identity Open · Scan
MA0009.2 NN 70-40% JASPAR TCACACCTAGGTGTGA 56.0% identity Open · Scan
M00833_2.00 NN 70-40% CisBP AGGTGTGA 55.9% identity Open · Scan
MA0807.1 NN 70-40% JASPAR AGGTGTGA 55.9% identity Open · Scan
MA0802.1 NN 70-40% JASPAR AGGTGTGAAA 55.7% identity Open · Scan
M05822_2.00 NN 70-40% CisBP GGAGGTGTGAAT 55.3% identity Open · Scan
MA0805.1 NN 70-40% JASPAR AGGTGTGA 55.3% identity Open · Scan
MA0804.1 NN 70-40% JASPAR TTTCACACCTAGGTGTGAAA 55.2% identity Open · Scan
M09429_2.00 NN 70-40% CisBP AAGGTGCTA 54.4% identity Open · Scan
MA1566.1 NN 70-40% JASPAR GAGGTGTGAA 54.4% identity Open · Scan
M08044_2.00 NN 70-40% CisBP GCATTCTGGGAATTGTAGTTT 54.3% identity Open · Scan
MA0688.1 NN 70-40% JASPAR AAGGTGTGAAA 54.3% identity Open · Scan
M02496_2.00 NN 70-40% CisBP AAGGTGTCAA 53.5% identity Open · Scan
MA0803.1 NN 70-40% JASPAR AGGTGTGA 52.7% identity Open · Scan
M02495_2.00 NN 70-40% CisBP TTGACACCTC 52.6% identity Open · Scan
M03554_2.00 NN 70-40% CisBP AGGTGTGAAATTCACACCT 52.3% identity Open · Scan
M03559_2.00 NN 70-40% CisBP AGGTGTGAAATTTCACACCT 52.1% identity Open · Scan
MA0806.1 NN 70-40% JASPAR AGGTGTGA 52.1% identity Open · Scan
M01030_2.00 NN 70-40% CisBP TTGACACCTC 51.4% identity Open · Scan
MA1565.1 NN 70-40% JASPAR GGAGGTGTGAAA 51.4% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 227 aa
90-208

Region 90-208 0 PWM

Residues
119 aa
Domains
PF00907 · T-box
3D models
1 active PDB
Templates
4S0H
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 90-2081 model
Actions
Predicted = Low DIMER_X5D304:90:208_4s0h_A_1 4s0h 90-208 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
94-208PF00907T-boxoverlaps 90-208