Region 145-216 5 PWM
- Residues
- 72 aa
- Domains
- PF01429 · Methyl-CpG binding domain
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 3C2I, 5BT2, 6C1Y, 6OGJ, 6OGK
- Sources
- Predicted = Low
Transcription factor
X6RBL6 - MBD2
Methyl-CpG binding domain protein 2
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 241 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M09257_2.00 | NN 70-40% | CisBP | CCCGGAG | 50.0% identity | Open · Scan |
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_X6RBL6_X6RBL6_HUMAN:145:204_6ogk_A_1 | ModCRE | Homology model | ACAATATAA | Region 145-204 · 1 3D model | Open · Scan | |
| TFS_tr_X6RBL6_X6RBL6_HUMAN:145:216_6ogj_B_1 | ModCRE | Homology model | TGGGGAG | Region 145-216 · 1 3D model | Open · Scan | |
| TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_3c2i_A_1 | ModCRE | Homology model | CCCCCCACTTG | Region 147-204 · 1 3D model | Open · Scan | |
| TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_5bt2_A_1 | ModCRE | Homology model | CGCCCACGCGTCA | Region 147-204 · 1 3D model | Open · Scan | |
| TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_6c1y_A_1 | ModCRE | Homology model | CGCCACACACC | Region 147-204 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
241 aa
145-216
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 145-2165 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_X6RBL6_X6RBL6_HUMAN:145:204_6ogk_A_1 | 6ogk | 145-204 | View model · PDB |
| Predicted = Low | TFS_tr_X6RBL6_X6RBL6_HUMAN:145:216_6ogj_B_1 | 6ogj | 145-216 | View model · PDB |
| Predicted = Low | TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_3c2i_A_1 | 3c2i | 147-204 | View model · PDB |
| Predicted = Low | TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_5bt2_A_1 | 5bt2 | 147-204 | View model · PDB |
| Predicted = Low | TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_6c1y_A_1 | 6c1y | 147-204 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 3c2i | 145:216 | 147 | 204 | P:A · DNA:B,C | 50.0% / 56.9% | 80 | View · PDB TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_3c2i_A_1 |
| 4 | 6c1y | 145:216 | 147 | 204 | P:A · DNA:C,D | 50.0% / 56.9% | 81 | View · PDB TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_6c1y_A_1 |
| 5 | 5bt2 | 145:216 | 147 | 204 | P:A · DNA:B,C | 50.0% / 56.9% | 81 | View · PDB TFS_tr_X6RBL6_X6RBL6_HUMAN:147:204_5bt2_A_1 |
| 3 | 6ogk | 145:216 | 145 | 204 | P:A · DNA:C,D | 48.3% / 56.7% | 78 | View · PDB TFS_tr_X6RBL6_X6RBL6_HUMAN:145:204_6ogk_A_1 |
| 2 | 6ogj | 145:216 | 145 | 216 | P:B · DNA:C,D | 48.1% / 61.0% | 87 | View · PDB TFS_tr_X6RBL6_X6RBL6_HUMAN:145:216_6ogj_B_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 148-214 | PF01429 | Methyl-CpG binding domain | overlaps 145-216 |