CisBP motif

M04434_2.00

Source: CisBP

Download MEME Scan DNA CIS-BP v2 direct source

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Matrix 11 positions

Position	A	C	G	T
1	0.1033	0.1733	0.3688	0.3545
2	0.2809	0.5303	0.1817	0.0071
3	0.0000	0.2107	0.0000	0.7893
4	0.9538	0.0068	0.0250	0.0144
5	0.0000	0.0040	0.0000	0.9960
6	0.9545	0.0083	0.0371	0.0000
7	0.0399	0.1895	0.6876	0.0830
8	0.0332	0.0177	0.9285	0.0206
9	0.0209	0.2177	0.2821	0.4793
10	0.1988	0.0389	0.6991	0.0633
11	0.4181	0.2615	0.1407	0.1797

TFs using this motif 4 linked TF records

2 known/direct, 0 nearest-neighbor >70%, 2 nearest-neighbor 50–70%, 0 structure-derived. Showing all 4 assignments.

TF record	Motif assignment	Identity	PFAM Families
Q8NDR3	Known		zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met2,zf-met,zf-H2C2_2,zf-TFIIB,HypA,Yippee,C1_1,zf-DNA_Pol,C1_4,zinc_ribbon_5,ATPase-cat_bd,HNH,zf-CHY,DUF2256,HTH_Tnp_ISL3,Zn_Tnp_IS1595,RRN7,zf-C2H2_6,zf-UBP,C1_2,Prok-RING_1,zf-H2C2_5,DUF2225,LIM,zf-BED,zf-RING_2,zf-C3HC4_2,zinc_ribbon_4,CxxC_CxxC_SSSS,zf-C2H2_2,zf-C2HC_2,CpXC
Q96K62	Known		zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,BTB,C1_4,zf-CHY,DUF2256,Zn_Tnp_IS1595,RRN7,zf-C2H2_6,zf-UBP,Prok-RING_1,LIM,zf-BED,zf-RING_2,zf-C3HC4_2,CxxC_CxxC_SSSS,zf-C2H2_2,zf-C2HC_2
Q9P1Z0	Nearest Neighbor (50–70%)	54.3%	zf-C2H2_4,zf-RING_3,zf-C2H2,Cenp-B_dimeris,zf-C2H2_jaz,FYDLN_acid,Nop14,zf-H2C2_2,BTB,zf-C2HC_2,Tmemb_55A,Nucleoplasmin
A0A0C4DGQ9	Nearest Neighbor (50–70%)	50.0%	zf-C2H2_4,zf-C2H2,zf-BED,zf-C2H2_jaz,KRAB,zf-met,zf-H2C2_2,HTH_Tnp_ISL3,CxxC_CxxC_SSSS,zf-C2H2_2,zf-C2H2_6