JASPAR motif
MA0116.1
Source: JASPAR
Sequence logo
Matrix
| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.2121 | 0.1212 | 0.6667 | 0.0000 |
| 2 | 0.0000 | 0.4848 | 0.5152 | 0.0000 |
| 3 | 0.4848 | 0.5152 | 0.0000 | 0.0000 |
| 4 | 0.5152 | 0.4848 | 0.0000 | 0.0000 |
| 5 | 0.0000 | 1.0000 | 0.0000 | 0.0000 |
| 6 | 0.0000 | 1.0000 | 0.0000 | 0.0000 |
| 7 | 0.0303 | 0.5152 | 0.0000 | 0.4545 |
| 8 | 0.7273 | 0.0000 | 0.0000 | 0.2727 |
| 9 | 0.3939 | 0.0000 | 0.4848 | 0.1212 |
| 10 | 0.0000 | 0.0000 | 1.0000 | 0.0000 |
| 11 | 0.0000 | 0.0000 | 1.0000 | 0.0000 |
| 12 | 0.0000 | 0.0000 | 0.5152 | 0.4848 |
| 13 | 0.0000 | 0.0000 | 0.4848 | 0.5152 |
| 14 | 0.0000 | 0.2424 | 0.4848 | 0.2727 |
| 15 | 0.3333 | 0.6667 | 0.0000 | 0.0000 |
TFs using this motif
0 known/direct, 2 nearest-neighbor >70%, 7 nearest-neighbor 50–70%, 0 structure-derived. Showing all 9 assignments.
| TF record | Motif assignment | Identity | PFAM Families |
|---|---|---|---|
| S4TMV6 | Nearest Neighbor (>70%) | 98.9% | zf-C2H2_4,zf-C2H2,DUF629,zinc_ribbon_5,zf-C3HC4_2,zinc_ribbon_4,zf-met2,zf-met,zf-H2C2_2,zf-Sec23_Sec24,zf-C2H2_2,zf-H2C2_5,Rubredoxin,zf-C2H2_6 |
| B7Z9C7 | Nearest Neighbor (>70%) | 96.3% | zf-C2H2_4,CdhC,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,zf-C2H2_6 |
| Q8IYZ2 | Nearest Neighbor (50–70%) | 62.4% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,zf-C2H2_6 |
| J3KTI4 | Nearest Neighbor (50–70%) | 61.2% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,zf-C2HC_2,zf-C2H2_6 |
| Q96K83 | Nearest Neighbor (50–70%) | 60.6% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,zf-C2H2_6 |
| A8KAK2 | Nearest Neighbor (50–70%) | 60.5% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,zf-C2H2_6 |
| H7BYU6 | Nearest Neighbor (50–70%) | 58.5% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,zf-C2H2_6 |
| O14889 | Nearest Neighbor (50–70%) | 53.8% | zf-C2H2_4,Fer4_17,Ribosomal_L37ae,zf-C2H2,Zn_ribbon_recom,UPF0547,Evr1_Alr,Prok-RING_2,C1_3,zf-C2H2_jaz,YhfH,Ogr_Delta,XPA_N,zf-met,zf-H2C2_2,Yippee,HypA,C1_1,A2L_zn_ribbon,C1_4,TFIIS_C,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,YyzF,Zn_Tnp_IS1595,zf-MYND,DUF35_N,RRN7,zf-C2H2_6,DUF2321,Desulfoferrod_N,C1_2,Fer4_2,FYVE,Prok-RING_1,zf-HIT,COX5B,Tnp_zf-ribbon_2,ZZ,PHD,DUF82,TF_Zn_Ribbon,SprT-like,DZR,DNA_RNApol_7kD,zf-BED,zf-trcl,zinc_ribbon_4,DUF1610,Fer4_4,CxxC_CxxC_SSSS,DUF164,CpXC,FYDLN_acid,Ribosomal_L44 |
| J3QQI2 | Nearest Neighbor (50–70%) | 50.8% | zf-C2H2_4,C1_4,zf-C2H2,zinc_ribbon_5,Prok-RING_1,zf-C2H2_jaz,zinc_ribbon_4,zf-met,Yippee,zf-H2C2_2,RNA_POL_M_15KD,zf-C2H2_2,DUF82,zf-H2C2_5,zf-MYND,CxxC_CxxC_SSSS,zf-C2H2_6,zf-LYAR |