CisBP motif
M04483_2.00
Source: CisBP
Sequence logo
Matrix
| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.3206 | 0.2868 | 0.2396 | 0.1530 |
| 2 | 0.1791 | 0.2787 | 0.0720 | 0.4702 |
| 3 | 0.3057 | 0.0010 | 0.6933 | 0.0000 |
| 4 | 0.0001 | 0.9990 | 0.0003 | 0.0006 |
| 5 | 0.9996 | 0.0000 | 0.0004 | 0.0000 |
| 6 | 0.0000 | 1.0000 | 0.0000 | 0.0000 |
| 7 | 0.9988 | 0.0004 | 0.0007 | 0.0001 |
| 8 | 0.0045 | 0.9450 | 0.0021 | 0.0484 |
| 9 | 0.4118 | 0.3261 | 0.2505 | 0.0117 |
| 10 | 0.0102 | 0.9826 | 0.0021 | 0.0051 |
| 11 | 0.0372 | 0.0103 | 0.0581 | 0.8944 |
| 12 | 0.0255 | 0.0688 | 0.7981 | 0.1076 |
| 13 | 0.5833 | 0.1701 | 0.0992 | 0.1475 |
| 14 | 0.6456 | 0.3427 | 0.0021 | 0.0096 |
| 15 | 0.9911 | 0.0033 | 0.0037 | 0.0019 |
| 16 | 0.5850 | 0.1641 | 0.1462 | 0.1047 |
| 17 | 0.3565 | 0.2334 | 0.1116 | 0.2985 |
TFs using this motif
1 known/direct, 0 nearest-neighbor >70%, 21 nearest-neighbor 50–70%, 0 structure-derived. Showing all 22 assignments.
| TF record | Motif assignment | Identity | PFAM Families |
|---|---|---|---|
| Q8NBB4 | Known | zf-C2H2_4,zf-C2H2,UPF0547,zf-C2H2_jaz,zf-H2C2_2,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,DUF2321,RRN7,zf-Mss51,zf-C2H2_6,zinc_ribbon_2,SapB_1,LIM,SCAN,zf-trcl,zinc_ribbon_4,IBR,CxxC_CxxC_SSSS | |
| P17040 | Nearest Neighbor (50–70%) | 65.4% | zf-C2H2_4,DUF4231,zf-C2H2,Myb_DNA-bind_4,SCAN,DNA_RNApol_7kD,zf-C2H2_jaz,XPA_N,zf-H2C2_2,Myb_DNA-bind_6,CxxC_CxxC_SSSS,Myb_DNA-bind_5,MADF_DNA_bdg,Yippee,HTH_Tnp_ISL3,zf-C2H2_6,Myb_DNA-binding |
| Q68D23 | Nearest Neighbor (50–70%) | 61.5% | zf-C2H2_4,zf-C2H2,tRNA-synt_2d,UPF0547,C1_3,zf-C2H2_jaz,BHD_2,XPA_N,Rapsyn_N,zf-H2C2_2,Yippee,C1_1,C1_4,TFIIS_C,zf-CHY,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,DUF2709,Desulfoferrod_N,Prok-RING_1,ZZ,Scramblase,DNA_RNApol_7kD,zf-BED,CxxC_CxxC_SSSS,BHD_1,BolA |
| Q4G1C8 | Nearest Neighbor (50–70%) | 60.9% | KRAB,SCAN,zf-met |
| Q7Z6G1 | Nearest Neighbor (50–70%) | 60.9% | KRAB,SCAN |
| Q9NWS9 | Nearest Neighbor (50–70%) | 60.9% | zf-C2H2_4,zf-C2H2,SCAN,FYVE,HNH,zf-C2H2_jaz,DUF2321,KRAB,zf-C2H2_6,zf-H2C2_2,DUF2256,CpXC,DZR |
| Q0VAP0 | Nearest Neighbor (50–70%) | 59.7% | KRAB,SCAN |
| B2RAT9 | Nearest Neighbor (50–70%) | 58.3% | zf-C2H2_4,C1_4,zf-C2H2,zf-ribbon_3,SCAN,zf-CHCC,zf-C2H2_jaz,ROS_MUCR,zf-met,zf-H2C2_2,CxxC_CxxC_SSSS,zf-C2H2_6 |
| Q15636 | Nearest Neighbor (50–70%) | 57.3% | KRAB,SCAN |
| Q0VAN9 | Nearest Neighbor (50–70%) | 56.9% | KRAB,SCAN |
| Q96LU8 | Nearest Neighbor (50–70%) | 56.7% | KRAB,SCAN |
| B7ZKX2 | Nearest Neighbor (50–70%) | 56.5% | zf-C2H2_4,zf-C2H2,SCAN,Ta0938,zf-C2H2_jaz,KRAB,zf-met,zf-H2C2_2,CxxC_CxxC_SSSS,GAGA,DUF2321,zf-C2H2_6,BolA |
| B3KXT5 | Nearest Neighbor (50–70%) | 56.0% | zf-C2H2_4,UPF0150,zf-C2H2,zf-C2H2_jaz,zf-met2,zf-met,XPA_N,zf-H2C2_2,GAGA,C1_1,zf-RING_3,zf-C2H2_6,KRAB,Rpr2,SCAN,zf-BED,zf-C3HC4_2,zf-C2HC_2,BolA |
| Q07644 | Nearest Neighbor (50–70%) | 55.9% | KRAB,SCAN |
| Q9NX65 | Nearest Neighbor (50–70%) | 55.7% | zf-C2H2_4,zf-C2H2,Pox_A3L,zf-C2H2_jaz,zf-met,XPA_N,zf-H2C2_2,Myb_DNA-bind_6,C1_4,zf-RING_3,HTH_Tnp_ISL3,zf-C2H2_6,KRAB,Myb_DNA-bind_4,SCAN,CxxC_CxxC_SSSS,HTH_18,zf-C2HC_2,BolA |
| Q8TBC5 | Nearest Neighbor (50–70%) | 55.6% | zf-H2C2_2,zf-C2H2,Zn_ribbon_recom,SCAN |
| Q6MZN6 | Nearest Neighbor (50–70%) | 53.8% | zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,Evr1_Alr,UPF0547,Prok-RING_2,C1_3,zf-C2H2_jaz,YhfH,XPA_N,zf-met,zf-H2C2_2,C1_4,TFIIS_C,HNH,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,zinc_ribbon_2,Desulfoferrod_N,C1_2,Prok-RING_1,zf-HIT,ZZ,DUF1062,ADK_lid,DUF1163,SprT-like,LIM,DNA_RNApol_7kD,zf-trcl,DUF1610,CxxC_CxxC_SSSS,DUF164,zf-C2HC_2,CpXC,FYDLN_acid,Ribosomal_L44,Rep_fac-A_C,BolA |
| Q9UL58 | Nearest Neighbor (50–70%) | 53.0% | zf-C2H2_4,C1_4,zf-C2H2,zf-MYND,SCAN,zf-C2H2_jaz,IBR,KRAB,Ribosomal_L17,zf-H2C2_2,HTH_Tnp_ISL3,CxxC_CxxC_SSSS,Yippee,Zn_Tnp_IS1595,zf-C2HC_2,zf-H2C2_5,zf-C2H2_6 |
| Q9H3U2 | Nearest Neighbor (50–70%) | 51.7% | zf-C2H2_4,zf-C2H2,Evr1_Alr,C1_3,zf-C2H2_jaz,XPA_N,zf-met,zf-H2C2_2,GAGA,C1_1,C1_4,TFIIS_C,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,Desulfoferrod_N,C1_2,zf-HIT,DUF1062,ADK_lid,zf-H2C2_5,SprT-like,LIM,DNA_RNApol_7kD,zf-trcl,DUF1610,CxxC_CxxC_SSSS,DUF164,FYDLN_acid,Ribosomal_L44,BolA |
| B3KNP9 | Nearest Neighbor (50–70%) | 51.5% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,XPA_N,zf-H2C2_2,Yippee,C1_4,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,DUF3357,zf-C2H2_6,Prok-RING_1,CDC45,KRAB,GATA,SCAN,DNA_RNApol_7kD,zinc_ribbon_4,CxxC_CxxC_SSSS,CpXC |
| Q8IY56 | Nearest Neighbor (50–70%) | 50.5% | zf-C2H2_4,zf-C2H2,YhfH,zf-C2H2_jaz,XPA_N,zf-H2C2_2,HypA,Yippee,zinc_ribbon_5,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,LIM,SCAN,DNA_RNApol_7kD,zf-trcl,zinc_ribbon_4,CxxC_CxxC_SSSS,CpXC,BolA |
| A7MD06 | Nearest Neighbor (50–70%) | 50.0% | zf-C2H2_4,zf-C2H2,SCAN,zf-C2H2_jaz,KRAB,XPA_N,zf-H2C2_2,CxxC_CxxC_SSSS,Zn_Tnp_IS1595,zf-C2HC_2,zf-C2H2_6,BolA |