CisBP motif
M04875_2.00
Source: CisBP
Sequence logo
Matrix
| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.1813 | 0.3216 | 0.3491 | 0.1481 |
| 2 | 0.3585 | 0.2823 | 0.0428 | 0.3164 |
| 3 | 0.0000 | 0.0000 | 1.0000 | 0.0000 |
| 4 | 0.9900 | 0.0000 | 0.0100 | 0.0000 |
| 5 | 0.0000 | 0.0000 | 0.0000 | 1.0000 |
| 6 | 1.0000 | 0.0000 | 0.0000 | 0.0000 |
| 7 | 0.9826 | 0.0000 | 0.0000 | 0.0174 |
| 8 | 0.0000 | 0.5651 | 0.3741 | 0.0608 |
| 9 | 0.2779 | 0.2207 | 0.4013 | 0.1001 |
| 10 | 0.2231 | 0.3212 | 0.1884 | 0.2672 |
TFs using this motif
1 known/direct, 5 nearest-neighbor >70%, 4 nearest-neighbor 50–70%, 0 structure-derived. Showing all 10 assignments.
| TF record | Motif assignment | Identity | PFAM Families |
|---|---|---|---|
| P43694 | Known | Elf1,zf-ribbon_3,DUF2387,BaffR-Tall_bind,Golgin_A5,ArfGap,CxxC_CxxC_SSSS,eIF-5_eIF-2B,GATA-N,TF_Zn_Ribbon,Zn_Tnp_IS1595,C1_1,Prim_Zn_Ribbon,DZR,GATA | |
| Q16365 | Nearest Neighbor (>70%) | 98.9% | Elf1,DUF2387,BaffR-Tall_bind,Golgin_A5,ArfGap,CxxC_CxxC_SSSS,eIF-5_eIF-2B,GATA-N,TF_Zn_Ribbon,Zn_Tnp_IS1595,Prim_Zn_Ribbon,DZR,GATA |
| R9UV10 | Nearest Neighbor (>70%) | 78.9% | zf-ribbon_3,CxxC_CxxC_SSSS,eIF-5_eIF-2B,TF_Zn_Ribbon,GATA,A2L_zn_ribbon |
| E5RFF3 | Nearest Neighbor (>70%) | 70.7% | zf-C2H2_4,GATA,zf-H2C2_5 |
| Q9UHF7 | Nearest Neighbor (>70%) | 70.7% | GATA,zf-H2C2_5 |
| A0A8Q3SIT6 | Nearest Neighbor (>70%) | 70.4% | Elf1,DUF2387,ArfGap,CxxC_CxxC_SSSS,eIF-5_eIF-2B,TF_Zn_Ribbon,Prim_Zn_Ribbon,DZR,GATA,A2L_zn_ribbon |
| H0YAV4 | Nearest Neighbor (50–70%) | 64.2% | TF_Zn_Ribbon,eIF-5_eIF-2B,GATA |
| Q53EU2 | Nearest Neighbor (50–70%) | 52.3% | Elf1,DUF2387,CxxC_CxxC_SSSS,eIF-5_eIF-2B,GATA-N,TF_Zn_Ribbon,Zn_Tnp_IS1595,Prim_Zn_Ribbon,DZR,GATA |
| B5MCP8 | Nearest Neighbor (50–70%) | 51.5% | ArfGap,zf-trcl,TF_Zn_Ribbon,RRN7,DZR,GATA,NOB1_Zn_bind |
| P0C6A0 | Nearest Neighbor (50–70%) | 51.5% | DZR,ArfGap,GATA |