CisBP motif
M08089_2.00
Source: CisBP
Sequence logo
Matrix
| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.2599 | 0.2051 | 0.3844 | 0.1506 |
| 2 | 0.1010 | 0.3907 | 0.4274 | 0.0809 |
| 3 | 0.0420 | 0.4195 | 0.0827 | 0.4558 |
| 4 | 0.0052 | 0.0042 | 0.9773 | 0.0133 |
| 5 | 0.0206 | 0.9496 | 0.0154 | 0.0144 |
| 6 | 0.0086 | 0.9572 | 0.0203 | 0.0139 |
| 7 | 0.0587 | 0.8743 | 0.0368 | 0.0301 |
| 8 | 0.0087 | 0.9105 | 0.0164 | 0.0644 |
| 9 | 0.0068 | 0.9741 | 0.0105 | 0.0086 |
| 10 | 0.0096 | 0.0172 | 0.0188 | 0.9543 |
| 11 | 0.1233 | 0.0606 | 0.7595 | 0.0565 |
| 12 | 0.0417 | 0.3284 | 0.5269 | 0.1030 |
| 13 | 0.1670 | 0.2856 | 0.1685 | 0.3789 |
| 14 | 0.0479 | 0.0974 | 0.7836 | 0.0710 |
TFs using this motif
3 known/direct, 6 nearest-neighbor >70%, 5 nearest-neighbor 50–70%, 0 structure-derived. Showing all 14 assignments.
| TF record | Motif assignment | Identity | PFAM Families |
|---|---|---|---|
| F5H2V8 | Known | zf-C2H2_4,zf-C2H2,zf-H2C2_2,GAGA,AKAP95 | |
| V9GY73 | Known | zf-C2H2_4,zf-H2C2_2,zf-C2H2,zf-H2C2_5 | |
| Q8NI51 | Known | zf-C2H2_4,zf-H2C2_2,zf-C2H2,zf-H2C2_5 | |
| A6XGM9 | Nearest Neighbor (>70%) | 99.8% | zf-C2H2_4,zf-H2C2_2,zf-C2H2,zf-H2C2_5 |
| A6XGM5 | Nearest Neighbor (>70%) | 99.7% | zf-C2H2_4,zf-C2H2,zf-H2C2_2,GAGA,AKAP95 |
| V9GZ46 | Nearest Neighbor (>70%) | 99.7% | zf-C2H2_4,zf-C2H2,zf-H2C2_2,zf-C2H2_2,AKAP95,GAGA,zf-H2C2_5 |
| A6XGM6 | Nearest Neighbor (>70%) | 99.4% | zf-C2H2_4,zf-C2H2,zf-H2C2_2,zf-C2H2_2,AKAP95,GAGA,zf-H2C2_5 |
| B2RA05 | Nearest Neighbor (>70%) | 99.4% | zf-C2H2_4,zf-H2C2_2,zf-C2H2,zf-H2C2_5 |
| A6XGN5 | Nearest Neighbor (>70%) | 99.2% | zf-C2H2_4,zf-C2H2,PhnJ,zf-C2H2_jaz,zf-H2C2_2,zf-C2H2_2,AKAP95,GAGA,zf-H2C2_5,HTH_18,zf-C2H2_6 |
| A0A2R8YFL0 | Nearest Neighbor (50–70%) | 69.7% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,ChAPs,GAGA,C1_1,zf-H2C2_5,zf-C2H2_2,zf-C2H2_6 |
| O14860 | Nearest Neighbor (50–70%) | 56.8% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,COX5B,XPA_N,zf-H2C2_2,CxxC_CxxC_SSSS,Zn_Tnp_IS1595,SprT-like,zf-C2H2_6,LIM,GATA,zf-LYAR |
| Q15927 | Nearest Neighbor (50–70%) | 52.5% | zf-C2H2_4,Elf1,zf-C2H2,C1_2,Desulfoferrod_N,FYVE,zf-trcl,zf-HIT,XPA_N,zf-H2C2_2,Ribosomal_S14,CxxC_CxxC_SSSS,Zn_Tnp_IS1595,C1_1,DUF2321,zf-C2H2_6 |
| Q7RTV3 | Nearest Neighbor (50–70%) | 50.8% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_6 |
| Q59F07 | Nearest Neighbor (50–70%) | 50.0% | zf-C2H2_4,zf-C2H2,DNA_RNApol_7kD,zf-trcl,XPA_N,zf-H2C2_2,CxxC_CxxC_SSSS,Zn_Tnp_IS1595,C1_1,DUF2321,zf-C2H2_6,zf-LYAR |