CisBP motif
M04595_2.00
Source: CisBP
Sequence logo
Matrix
| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.2771 | 0.1415 | 0.3012 | 0.2802 |
| 2 | 0.1273 | 0.1479 | 0.1283 | 0.5964 |
| 3 | 0.0983 | 0.1496 | 0.0495 | 0.7026 |
| 4 | 0.1212 | 0.1812 | 0.0292 | 0.6683 |
| 5 | 0.1357 | 0.8511 | 0.0027 | 0.0105 |
| 6 | 0.0000 | 0.9978 | 0.0022 | 0.0000 |
| 7 | 0.0000 | 0.0848 | 0.9152 | 0.0000 |
| 8 | 0.0011 | 0.0009 | 0.9345 | 0.0635 |
| 9 | 0.0000 | 0.0010 | 0.0000 | 0.9990 |
| 10 | 0.7145 | 0.0115 | 0.0420 | 0.2320 |
| 11 | 0.5967 | 0.1716 | 0.1154 | 0.1163 |
| 12 | 0.2530 | 0.4771 | 0.1009 | 0.1690 |
TFs using this motif
1 known/direct, 0 nearest-neighbor >70%, 17 nearest-neighbor 50–70%, 0 structure-derived. Showing all 18 assignments.
| TF record | Motif assignment | Identity | PFAM Families |
|---|---|---|---|
| Q8N680 | Known | zf-C2H2_4,C1_4,zf-C2H2,Prok-RING_1,zf-C2H2_jaz,zf-met,zf-H2C2_2,CxxC_CxxC_SSSS,BTB,zf-C2H2_2,zf-C2HC_2,zf-C2H2_6 | |
| B3KRH5 | Nearest Neighbor (50–70%) | 55.5% | zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,Prok-RING_2,C1_3,zf-C2H2_jaz,YhfH,zf-met,XPA_N,zf-H2C2_2,Yippee,Ring_hydroxyl_B,MBD,A2L_zn_ribbon,C1_4,TFIIS_C,DUF2256,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,zf-UBP,Prok-RING_1,ADK_lid,LIM,GATA,DNA_RNApol_7kD,zf-BED,zf-trcl,CxxC_CxxC_SSSS,zf-C2HC_2,CpXC,FYDLN_acid,BolA |
| B3KXT5 | Nearest Neighbor (50–70%) | 55.2% | zf-C2H2_4,UPF0150,zf-C2H2,zf-C2H2_jaz,zf-met2,zf-met,XPA_N,zf-H2C2_2,GAGA,C1_1,zf-RING_3,zf-C2H2_6,KRAB,Rpr2,SCAN,zf-BED,zf-C3HC4_2,zf-C2HC_2,BolA |
| A0A994J5C6 | Nearest Neighbor (50–70%) | 53.8% | zf-C2H2_4,CpXC,zf-C2H2,zf-CHCC,Elf1,Di19,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,GAGA,zf-H2C2_5 |
| A0A994J7Z0 | Nearest Neighbor (50–70%) | 53.8% | zf-C2H2_4,zf-C2H2,zf-CHCC,Di19,zf-C2H2_jaz,C1_3,Rad50_zn_hook,zf-H2C2_2,zf-C2H2_2,GAGA,zf-H2C2_5,zf-DNA_Pol |
| A7E228 | Nearest Neighbor (50–70%) | 53.8% | zf-C2H2_4,zf-C2H2,zf-CHCC,Di19,zf-C2H2_jaz,C1_3,Rad50_zn_hook,zf-H2C2_2,zf-C2H2_2,GAGA,zf-H2C2_5,zf-DNA_Pol |
| K7EKT4 | Nearest Neighbor (50–70%) | 53.8% | zf-C2H2_4,CpXC,zf-C2H2,zf-CHCC,Di19,zf-C2H2_jaz,C1_3,zf-H2C2_2,zf-C2H2_2,GAGA,Zn_Tnp_IS1595,zf-H2C2_5,zf-DNA_Pol |
| K7EQN6 | Nearest Neighbor (50–70%) | 53.8% | zf-C2H2_4,zf-C2H2,Di19,zf-C2H2_jaz,C1_3,Rad50_zn_hook,zf-H2C2_2,zf-C2H2_2,GAGA,zf-H2C2_5,zf-DNA_Pol |
| O15090 | Nearest Neighbor (50–70%) | 53.8% | zf-C2H2_4,zf-C2H2,zf-CHCC,Di19,zf-C2H2_jaz,C1_3,Rad50_zn_hook,zf-H2C2_2,zf-C2H2_2,GAGA,zf-H2C2_5,zf-DNA_Pol |
| Q13582 | Nearest Neighbor (50–70%) | 53.4% | zf-C2H2_4,Ribosomal_L37ae,zf-C2H2,zf-DNL,zf-C2H2_jaz,XPA_N,zf-met,zf-H2C2_2,Yippee,C1_1,C1_4,TFIIS_C,zf-CHY,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,DUF1407,ZZ,LIM,zf-BED,zf-trcl,DUF1610,CxxC_CxxC_SSSS,DUF164,zf-LYAR |
| D6RC96 | Nearest Neighbor (50–70%) | 52.6% | zf-C2H2_4,PyrI_C,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,BTB |
| D6RJ00 | Nearest Neighbor (50–70%) | 52.6% | Tet_JBP,BTB |
| Q6ZSB9 | Nearest Neighbor (50–70%) | 52.6% | zf-C2H2_4,PyrI_C,zf-C2H2,Elf1,zf-C2H2_jaz,zf-met,zf-H2C2_2,BTB,GAGA,zf-C2HC_2,zf-C2H2_6,BolA |
| F5H2K2 | Nearest Neighbor (50–70%) | 51.5% | zf-C2H2_4,zf-C2H2,PRP21_like_P,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,zf-C2HC_2,zf-C2H2_6 |
| Q92618 | Nearest Neighbor (50–70%) | 51.5% | zf-C2H2_4,zf-C2H2,zf-H2C2_2,zf-C2H2_2,zf-H2C2_5 |
| O14861 | Nearest Neighbor (50–70%) | 50.0% | zf-C2H2_4,Fer4_17,zf-C2H2,UPF0547,Evr1_Alr,C1_3,zf-C2H2_jaz,YhfH,XPA_N,zf-H2C2_2,Yippee,HypA,C1_1,A2L_zn_ribbon,C1_4,zf-RING_3,TFIIS_C,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-UBR,zf-Mss51,zinc_ribbon_2,zf-C2H2_6,C1_2,Prok-RING_1,Tnp_zf-ribbon_2,PHD,ADK_lid,SprT-like,DNA_RNApol_7kD,zf-trcl,zinc_ribbon_4,DUF1610,CxxC_CxxC_SSSS,DUF164,CpXC,Ribosomal_L44 |
| O14888 | Nearest Neighbor (50–70%) | 50.0% | zf-C2H2_4,C1_4,zf-C2H2,Desulfoferrod_N,TFIIS_C,FYVE,YhfH,zf-C2H2_jaz,zf-trcl,IBR,XPA_N,zf-H2C2_2,CxxC_CxxC_SSSS,zf-C2H2_6,LIM,BolA |
| Q8IZ20 | Nearest Neighbor (50–70%) | 50.0% | zf-C2H2_4,C1_4,zf-C2H2,C1_2,Desulfoferrod_N,zinc_ribbon_5,zf-C2H2_jaz,zf-C3HC4_2,zf-met,zf-H2C2_2,CxxC_CxxC_SSSS,Baculo_IE-1,RRN7,zf-C2H2_6 |