CisBP motif
M04651_2.00
Source: CisBP
Sequence logo
Matrix
| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.2564 | 0.2392 | 0.0721 | 0.4323 |
| 2 | 0.0311 | 0.0024 | 0.3542 | 0.6123 |
| 3 | 0.0000 | 0.9980 | 0.0000 | 0.0020 |
| 4 | 0.9891 | 0.0100 | 0.0000 | 0.0009 |
| 5 | 0.0015 | 0.9977 | 0.0000 | 0.0008 |
| 6 | 0.2432 | 0.1446 | 0.0425 | 0.5696 |
| 7 | 0.9867 | 0.0020 | 0.0038 | 0.0075 |
| 8 | 0.0044 | 0.4143 | 0.0852 | 0.4962 |
| 9 | 0.3524 | 0.1298 | 0.1318 | 0.3860 |
| 10 | 0.5051 | 0.0802 | 0.4074 | 0.0073 |
| 11 | 0.0037 | 0.0014 | 0.0025 | 0.9924 |
| 12 | 0.5634 | 0.0450 | 0.1400 | 0.2516 |
| 13 | 0.0031 | 0.0000 | 0.9961 | 0.0008 |
| 14 | 0.0005 | 0.0026 | 0.0066 | 0.9903 |
| 15 | 0.0000 | 0.0005 | 0.9981 | 0.0014 |
| 16 | 0.6133 | 0.3481 | 0.0033 | 0.0353 |
| 17 | 0.4451 | 0.0769 | 0.2370 | 0.2409 |
TFs using this motif
3 known/direct, 2 nearest-neighbor >70%, 15 nearest-neighbor 50–70%, 0 structure-derived. Showing all 20 assignments.
| TF record | Motif assignment | Identity | PFAM Families |
|---|---|---|---|
| A0A1U9X8V3 | Known | zf-C2H2_4,DUF2225,Elf1,zf-C2H2,zf-C2H2_jaz,zf-H2C2_2,DUF2256,BTB,Rtf2,zf-C2H2_2,zf-C2H2_6 | |
| A2AB93 | Known | HOK_GEF,BTB | |
| O15209 | Known | zf-C2H2_4,DUF2225,Elf1,zf-C2H2,zf-C2H2_jaz,zf-H2C2_2,DUF2256,BTB,Rtf2,zf-C2H2_2,zf-C2H2_6 | |
| A0A1U9X8U9 | Nearest Neighbor (>70%) | 99.8% | zf-C2H2_4,DUF2225,Elf1,zf-C2H2,zf-C2H2_jaz,zf-H2C2_2,DUF2256,BTB,Rtf2,zf-C2H2_2,zf-C2H2_6 |
| B3KTS2 | Nearest Neighbor (>70%) | 99.5% | zf-C2H2_4,DUF2225,Elf1,zf-C2H2,zf-C2H2_jaz,zf-H2C2_2,DUF2256,BTB,Rtf2,zf-C2H2_2,zf-C2H2_6 |
| A0A1X7SC99 | Nearest Neighbor (50–70%) | 57.5% | zf-C2H2_4,zf-RING_3,Elf1,zf-C2H2,Zn_ribbon_recom,Sgf11,zinc_ribbon_5,Di19,zf-C2H2_jaz,zf-AN1,zf-met,zf-H2C2_2,DZR,zf-C2H2_2,zf-H2C2_5,Rubredoxin,zf-C2H2_6 |
| E7ESP8 | Nearest Neighbor (50–70%) | 57.5% | zf-C2H2_4,Sgf11,zf-C2H2,Zn_ribbon_recom,Di19,zf-C2H2_jaz,zf-met,zf-H2C2_2,HypA,Rubredoxin,zf-RING_3,zinc_ribbon_5,zf-AN1,Tmemb_55A,zf-C2H2_6,zf-H2C2_5,Elf1,zf-RING_2,zinc_ribbon_4,CxxC_CxxC_SSSS,zf-C2H2_2,zf-C2HC_2 |
| E7EUW9 | Nearest Neighbor (50–70%) | 57.5% | zf-C2H2_4,Elf1,zf-C2H2,Zn_ribbon_recom,zinc_ribbon_5,Di19,zf-C2H2_jaz,zf-AN1,zf-met,zf-H2C2_2,Homeobox,HypA,zf-C2H2_2,zf-H2C2_5,Rubredoxin,zf-C2H2_6 |
| Q60F94 | Nearest Neighbor (50–70%) | 57.5% | zf-C2H2_4,Sgf11,zf-C2H2,Zn_ribbon_recom,Di19,zf-C2H2_jaz,zf-met,zf-H2C2_2,HypA,Rubredoxin,zf-RING_3,zinc_ribbon_5,zf-AN1,Tmemb_55A,zf-C2H2_6,zf-H2C2_5,DZR,Elf1,zf-RING_2,zf-C3HC4_2,zinc_ribbon_4,CxxC_CxxC_SSSS,zf-C2H2_2 |
| Q60F95 | Nearest Neighbor (50–70%) | 57.5% | zf-C2H2_4,Sgf11,zf-C2H2,Zn_ribbon_recom,Di19,zf-C2H2_jaz,zf-met,zf-H2C2_2,HypA,Rubredoxin,zf-RING_3,zinc_ribbon_5,zf-AN1,Tmemb_55A,zf-C2H2_6,zf-H2C2_5,DZR,Elf1,zf-RING_2,zinc_ribbon_4,CxxC_CxxC_SSSS,zf-C2H2_2,zf-C2HC_2 |
| H0YND9 | Nearest Neighbor (50–70%) | 56.1% | zf-C2H2_4,zf-RING_3,Sgf11,zf-C2H2,Zn_ribbon_recom,zinc_ribbon_5,zf-C2H2_jaz,zf-met,zf-H2C2_2,CxxC_CxxC_SSSS,zf-C2H2_2,zf-H2C2_5,zf-C2H2_6 |
| D6RC96 | Nearest Neighbor (50–70%) | 55.0% | zf-C2H2_4,PyrI_C,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,BTB |
| D6RJ00 | Nearest Neighbor (50–70%) | 55.0% | Tet_JBP,BTB |
| B4DS26 | Nearest Neighbor (50–70%) | 54.3% | zf-C2H2_4,zf-DBF,Elf1,zf-C2H2,Zn_ribbon_recom,zf-C2H2_jaz,zf-met,zf-H2C2_2,Homeobox,CxxC_CxxC_SSSS,zf-C2H2_2,zf-C2H2_6 |
| A8K6F4 | Nearest Neighbor (50–70%) | 53.5% | zf-C2H2_4,zf-C2H2,Mito_fiss_reg,zf-C2H2_jaz,zf-CHY,zf-met,zf-H2C2_2,BTB,zf-C2H2_2,GAGA,C1_1,RRN7,zf-C2H2_6 |
| A0A1B0GV48 | Nearest Neighbor (50–70%) | 53.4% | zf-C2H2_4,PyrI_C,zf-C2H2,zf-C2H2_jaz,zf-CHY,zf-H2C2_2,BTB,zf-C2H2_2,zf-C2HC_2,SprT-like,zf-C2H2_6 |
| D6RBC4 | Nearest Neighbor (50–70%) | 53.4% | zf-C2H2_4,PyrI_C,zf-C2H2,zf-C2H2_jaz,zf-CHY,zf-met,zf-H2C2_2,BTB,zf-C2H2_2,zf-C2HC_2,SprT-like,zf-C2H2_6 |
| A0A0A0MR11 | Nearest Neighbor (50–70%) | 52.8% | zf-C2H2_4,C1_4,zf-C2H2,zf-C2H2_jaz,KRAB,zf-H2C2_2,Siva,HTH_18,Zn_Tnp_IS1595,zf-H2C2_5,zf-C2H2_6,BolA |
| A0AUX1 | Nearest Neighbor (50–70%) | 52.8% | zf-C2H2_4,C1_4,zf-C2H2,zf-C2H2_jaz,KRAB,zf-H2C2_2,Siva,HTH_18,Zn_Tnp_IS1595,zf-H2C2_5,zf-C2H2_6,BolA |
| B3KRH5 | Nearest Neighbor (50–70%) | 51.8% | zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,Prok-RING_2,C1_3,zf-C2H2_jaz,YhfH,zf-met,XPA_N,zf-H2C2_2,Yippee,Ring_hydroxyl_B,MBD,A2L_zn_ribbon,C1_4,TFIIS_C,DUF2256,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,zf-UBP,Prok-RING_1,ADK_lid,LIM,GATA,DNA_RNApol_7kD,zf-BED,zf-trcl,CxxC_CxxC_SSSS,zf-C2HC_2,CpXC,FYDLN_acid,BolA |