JASPAR motif
MA0088.2
Source: JASPAR
Sequence logo
Matrix
| Position | A | C | G | T |
|---|---|---|---|---|
| 1 | 0.0428 | 0.2502 | 0.0752 | 0.6318 |
| 2 | 0.5880 | 0.0000 | 0.0081 | 0.4040 |
| 3 | 0.0130 | 0.9857 | 0.0006 | 0.0006 |
| 4 | 0.0012 | 0.9988 | 0.0000 | 0.0000 |
| 5 | 0.0000 | 1.0000 | 0.0000 | 0.0000 |
| 6 | 0.9957 | 0.0000 | 0.0025 | 0.0019 |
| 7 | 0.0000 | 0.5511 | 0.0367 | 0.4123 |
| 8 | 0.7408 | 0.0818 | 0.1773 | 0.0000 |
| 9 | 0.9585 | 0.0000 | 0.0409 | 0.0006 |
| 10 | 0.0037 | 0.0000 | 0.0006 | 0.9957 |
| 11 | 0.0356 | 0.0217 | 0.9372 | 0.0054 |
| 12 | 0.0000 | 1.0000 | 0.0000 | 0.0000 |
| 13 | 0.8915 | 0.0907 | 0.0018 | 0.0160 |
| 14 | 0.1376 | 0.4256 | 0.0060 | 0.4308 |
| 15 | 0.0416 | 0.4641 | 0.0053 | 0.4890 |
| 16 | 0.1872 | 0.0103 | 0.7438 | 0.0588 |
TFs using this motif
1 known/direct, 3 nearest-neighbor >70%, 11 nearest-neighbor 50–70%, 0 structure-derived. Showing all 15 assignments.
| TF record | Motif assignment | Identity | PFAM Families |
|---|---|---|---|
| P52747 | Known | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-TRAF,zf-H2C2_2,CopK,zf-C2H2_6 | |
| Q9H176 | Nearest Neighbor (>70%) | 96.1% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,Ogr_Delta,zf-TRAF,zf-met,zf-H2C2_2,zf-C2HC_2,CopK,zf-C2H2_6 |
| E7EN86 | Nearest Neighbor (>70%) | 95.4% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-TRAF,zf-H2C2_2,CopK,zf-C2H2_6 |
| Q59HH4 | Nearest Neighbor (>70%) | 85.0% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-TRAF,zf-met,zf-H2C2_2 |
| B4DGI1 | Nearest Neighbor (50–70%) | 65.7% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,CopK,zf-C2H2_6 |
| B4DHU8 | Nearest Neighbor (50–70%) | 65.4% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,Ogr_Delta,zf-TRAF,zf-met,CCAP,zf-H2C2_2,CopK |
| E7EX64 | Nearest Neighbor (50–70%) | 65.3% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,Ogr_Delta,zf-TRAF,zf-met,zf-H2C2_2,CopK |
| B7Z851 | Nearest Neighbor (50–70%) | 62.6% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,Ogr_Delta,IBR,zf-TRAF,zf-met,zf-H2C2_2,CopK |
| P36508 | Nearest Neighbor (50–70%) | 56.8% | zf-C2H2_4,zf-C2H2,DUF1697,zf-C2H2_jaz,zf-TRAF,FecR,zf-met,zf-H2C2_2,CopK,CpXC,FYDLN_acid,zf-C2H2_6 |
| B7TQ30 | Nearest Neighbor (50–70%) | 55.5% | zf-C2H2_4,zf-C2H2 |
| B9UZC5 | Nearest Neighbor (50–70%) | 55.5% | zf-C2H2_4,zf-C2H2 |
| Q9BY29 | Nearest Neighbor (50–70%) | 53.5% | zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,XPA_N,Rapsyn_N,zf-H2C2_2,Yippee,C1_4,TFIIS_C,zf-CHY,Zn_Tnp_IS1595,zf-C2H2_6,PHD,DUF4389,GATA,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,CpXC,BHD_1,BolA |
| A8K3T5 | Nearest Neighbor (50–70%) | 52.0% | zf-C2H2_4,zf-C2H2,C1_3,zf-H2C2_2,HypA,zf-DNA_Pol,DUF2752,Rad50_zn_hook,Zn_Tnp_IS1595,zf-Mss51,Terminase_GpA,zf-C2H2_6,Prok-RING_1,zf-H2C2_5,DUF2225,DZR,Elf1,CxxC_CxxC_SSSS,zf-C2H2_2 |
| Q9P2Y4 | Nearest Neighbor (50–70%) | 52.0% | zf-C2H2_4,zf-C2H2,C1_3,zf-H2C2_2,HypA,zf-DNA_Pol,DUF2752,Rad50_zn_hook,Zn_Tnp_IS1595,zf-Mss51,Terminase_GpA,zf-C2H2_6,Prok-RING_1,zf-H2C2_5,DUF2225,DZR,Elf1,CxxC_CxxC_SSSS,zf-C2H2_2 |
| A0A994J5C6 | Nearest Neighbor (50–70%) | 50.0% | zf-C2H2_4,CpXC,zf-C2H2,zf-CHCC,Elf1,Di19,zf-C2H2_jaz,zf-met,zf-H2C2_2,zf-C2H2_2,GAGA,zf-H2C2_5 |