ModCRE DB

CisBP motif

M04480_2.00

Source: CisBP

Sequence logo

Matrix 18 positions
Position A C G T
1 0.5410 0.2232 0.1801 0.0557
2 0.2296 0.3095 0.0269 0.4340
3 0.0000 0.0011 0.0000 0.9989
4 0.0000 0.0023 0.9977 0.0000
5 0.9517 0.0406 0.0009 0.0068
6 0.0000 0.0007 0.0000 0.9993
7 0.2377 0.1087 0.3029 0.3506
8 0.3813 0.2783 0.2406 0.0998
9 0.0082 0.7680 0.0092 0.2146
10 0.0000 0.9949 0.0009 0.0041
11 0.0050 0.9950 0.0000 0.0000
12 0.7945 0.0623 0.1137 0.0295
13 0.1626 0.5020 0.0655 0.2699
14 0.0843 0.7227 0.0566 0.1364
15 0.0011 0.8854 0.0000 0.1135
16 0.0517 0.0515 0.0273 0.8694
17 0.5595 0.1275 0.2332 0.0798
18 0.1396 0.4963 0.1062 0.2578
TFs using this motif 42 linked TF records

1 known/direct, 3 nearest-neighbor >70%, 38 nearest-neighbor 50–70%, 0 structure-derived. Showing all 42 assignments.

TF record Motif assignment Identity PFAM Families
Q6AZW8 Known zf-C2H2_4,zf-C2H2,YEATS,Zn_ribbon_recom,C1_3,zf-C2H2_jaz,YhfH,XPA_N,zf-met,zf-H2C2_2,Yippee,C1_1,MBD,A2L_zn_ribbon,C1_4,TFIIS_C,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,C1_2,Prok-RING_1,ZZ,DZR,LIM,DNA_RNApol_7kD,zf-BED,zf-trcl,CxxC_CxxC_SSSS,DUF164,CpXC,zf-LYAR,BolA
Q68D23 Nearest Neighbor (>70%) 75.8% zf-C2H2_4,zf-C2H2,tRNA-synt_2d,UPF0547,C1_3,zf-C2H2_jaz,BHD_2,XPA_N,Rapsyn_N,zf-H2C2_2,Yippee,C1_1,C1_4,TFIIS_C,zf-CHY,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,DUF2709,Desulfoferrod_N,Prok-RING_1,ZZ,Scramblase,DNA_RNApol_7kD,zf-BED,CxxC_CxxC_SSSS,BHD_1,BolA
Q9NT78 Nearest Neighbor (>70%) 72.4% zf-C2H2_4,zf-C2H2,Evr1_Alr,C1_3,zf-C2H2_jaz,zf-met,Rapsyn_N,zf-H2C2_2,XPA_N,Yippee,C1_4,TFIIS_C,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,DUF3280,Siva,CxxC_CxxC_SSSS,DUF164,BolA
A0A0G2JQ90 Nearest Neighbor (>70%) 71.4% zf-C2H2_4,zf-C2H2,Evr1_Alr,Prok-RING_2,C1_3,zf-C2H2_jaz,YhfH,XPA_N,zf-H2C2_2,Yippee,GAGA,C1_4,TFIIS_C,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,Desulfoferrod_N,C1_2,Prok-RING_1,SprT-like,PKD,DNA_RNApol_7kD,zf-trcl,DUF1610,CxxC_CxxC_SSSS,DUF164,Ribosomal_L44,BolA
O14861 Nearest Neighbor (50–70%) 68.0% zf-C2H2_4,Fer4_17,zf-C2H2,UPF0547,Evr1_Alr,C1_3,zf-C2H2_jaz,YhfH,XPA_N,zf-H2C2_2,Yippee,HypA,C1_1,A2L_zn_ribbon,C1_4,zf-RING_3,TFIIS_C,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-UBR,zf-Mss51,zinc_ribbon_2,zf-C2H2_6,C1_2,Prok-RING_1,Tnp_zf-ribbon_2,PHD,ADK_lid,SprT-like,DNA_RNApol_7kD,zf-trcl,zinc_ribbon_4,DUF1610,CxxC_CxxC_SSSS,DUF164,CpXC,Ribosomal_L44
A0A075B7G3 Nearest Neighbor (50–70%) 64.5% zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,Prok-RING_2,C1_3,zf-C2H2_jaz,Ogr_Delta,YhfH,XPA_N,zf-H2C2_2,GAGA,C1_4,TFIIS_C,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-UBR,DUF2321,zf-C2H2_6,Desulfoferrod_N,C1_2,Prok-RING_1,zf-HIT,ADK_lid,LIM,DNA_RNApol_7kD,zf-trcl,DUF1610,CxxC_CxxC_SSSS,DUF164,FYDLN_acid,Ribosomal_L44
Q658Q3 Nearest Neighbor (50–70%) 63.3% zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,C1_3,zf-C2H2_jaz,XPA_N,zf-met,zf-H2C2_2,Yippee,C1_1,MBD,DUF899,C1_4,zf-AN1,HTH_Tnp_ISL3,Chordopox_RPO7,Zn_Tnp_IS1595,zf-C2H2_6,zf-UBP,Prok-RING_1,Siva,LIM,PhnJ,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,CpXC,BolA
O14889 Nearest Neighbor (50–70%) 62.6% zf-C2H2_4,Fer4_17,Ribosomal_L37ae,zf-C2H2,Zn_ribbon_recom,UPF0547,Evr1_Alr,Prok-RING_2,C1_3,zf-C2H2_jaz,YhfH,Ogr_Delta,XPA_N,zf-met,zf-H2C2_2,Yippee,HypA,C1_1,A2L_zn_ribbon,C1_4,TFIIS_C,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,YyzF,Zn_Tnp_IS1595,zf-MYND,DUF35_N,RRN7,zf-C2H2_6,DUF2321,Desulfoferrod_N,C1_2,Fer4_2,FYVE,Prok-RING_1,zf-HIT,COX5B,Tnp_zf-ribbon_2,ZZ,PHD,DUF82,TF_Zn_Ribbon,SprT-like,DZR,DNA_RNApol_7kD,zf-BED,zf-trcl,zinc_ribbon_4,DUF1610,Fer4_4,CxxC_CxxC_SSSS,DUF164,CpXC,FYDLN_acid,Ribosomal_L44
B4DX79 Nearest Neighbor (50–70%) 61.2% zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,Prok-RING_2,C1_3,zf-C2H2_jaz,Ogr_Delta,YhfH,XPA_N,zf-H2C2_2,GAGA,C1_4,TFIIS_C,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-UBR,DUF2321,zf-C2H2_6,Desulfoferrod_N,C1_2,Prok-RING_1,zf-HIT,ADK_lid,LIM,DNA_RNApol_7kD,zf-trcl,DUF1610,CxxC_CxxC_SSSS,DUF164,FYDLN_acid,Ribosomal_L44
C9JTJ1 Nearest Neighbor (50–70%) 60.7% zf-C2H2_4,C1_4,zf-C2H2,C1_2,SpoU_sub_bind,Prok-RING_2,zf-BED,DNA_RNApol_7kD,zf-C2H2_jaz,zf-trcl,zf-CHY,zf-AN1,zf-H2C2_2,CxxC_CxxC_SSSS,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,BolA
Q6RFR6 Nearest Neighbor (50–70%) 58.2% zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,XPA_N,Rapsyn_N,zf-H2C2_2,Yippee,HypA,C1_4,zf-RING_3,TFIIS_C,zinc_ribbon_5,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,ZZ,GATA,DNA_RNApol_7kD,zf-trcl,zinc_ribbon_4,CxxC_CxxC_SSSS,CpXC,BHD_1,Ribosomal_L44,BolA
O14860 Nearest Neighbor (50–70%) 55.5% zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,COX5B,XPA_N,zf-H2C2_2,CxxC_CxxC_SSSS,Zn_Tnp_IS1595,SprT-like,zf-C2H2_6,LIM,GATA,zf-LYAR
Q15927 Nearest Neighbor (50–70%) 55.5% zf-C2H2_4,Elf1,zf-C2H2,C1_2,Desulfoferrod_N,FYVE,zf-trcl,zf-HIT,XPA_N,zf-H2C2_2,Ribosomal_S14,CxxC_CxxC_SSSS,Zn_Tnp_IS1595,C1_1,DUF2321,zf-C2H2_6
B2RE66 Nearest Neighbor (50–70%) 55.3% zf-C2H2_4,zf-C2H2,C1_3,zf-C2H2_jaz,XPA_N,zf-met,zf-H2C2_2,C1_1,C1_4,zf-RING_3,TFIIS_C,Raffinose_syn,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,Prok-RING_1,Siva,zf-H2C2_5,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,FYDLN_acid,Minor_capsid_1
Q9H7U2 Nearest Neighbor (50–70%) 55.2% zf-C2H2_4,C1_4,zf-C2H2,C1_3,zf-C2H2_jaz,zf-AN1,XPA_N,ZZ,zf-H2C2_2,CxxC_CxxC_SSSS,HTH_Tnp_ISL3,Yippee,Zn_Tnp_IS1595,zf-C2H2_6,BolA
M0QY24 Nearest Neighbor (50–70%) 55.1% zf-C2H2_4,C1_4,zf-C2H2,Rpr2,TFIIS_C,DNA_RNApol_7kD,zf-C2H2_jaz,zf-CHY,KRAB,XPA_N,zf-met,zf-H2C2_2,CxxC_CxxC_SSSS,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6
Q86UE3 Nearest Neighbor (50–70%) 55.1% zf-C2H2_4,C1_4,zf-C2H2,Rpr2,TFIIS_C,DNA_RNApol_7kD,zf-C2H2_jaz,zf-CHY,KRAB,XPA_N,zf-met,zf-H2C2_2,CxxC_CxxC_SSSS,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6
Q8N981 Nearest Neighbor (50–70%) 54.5% zf-C2H2_4,zf-C2H2,C1_3,zf-C2H2_jaz,YhfH,zf-met2,XPA_N,zf-met,zf-H2C2_2,Yippee,C1_4,zf-RING_3,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-UBR,zf-C2H2_6,C1_2,Desulfoferrod_N,DUF1407,ZZ,zf-Sec23_Sec24,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,HTH_18,BolA
B3KVL3 Nearest Neighbor (50–70%) 54.3% zf-C2H2_4,zf-C2H2,NifU_N,Prok-RING_2,C1_3,zf-C2H2_jaz,XPA_N,Rapsyn_N,zf-H2C2_2,Yippee,C1_4,TFIIS_C,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,C1_2,FYVE,KRAB,GATA,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,BolA
Q8NF99 Nearest Neighbor (50–70%) 54.3% zf-C2H2_4,zf-C2H2,UPF0547,C1_3,zf-C2H2_jaz,XPA_N,zf-H2C2_2,Yippee,C1_4,TFIIS_C,zinc_ribbon_5,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,Prok-RING_1,ZZ,zf-H2C2_5,LIM,GATA,SCAN,DNA_RNApol_7kD,zf-BED,zinc_ribbon_4,CxxC_CxxC_SSSS,CpXC,Ribosomal_L44,BolA
Q9Y2P0 Nearest Neighbor (50–70%) 54.2% zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,zf-C2H2_jaz,BHD_2,XPA_N,zf-H2C2_2,Yippee,GAGA,C1_1,DrsE,C1_4,Zn_Tnp_IS1595,zf-MYND,zf-C2H2_6,Elf1,DNA_RNApol_7kD,CxxC_CxxC_SSSS,zf-LYAR
P52743 Nearest Neighbor (50–70%) 54.0% zf-C2H2_4,zf-C2H2,Prok-RING_2,zf-C2H2_jaz,XPA_N,zf-H2C2_2,C1_1,A2L_zn_ribbon,zinc_ribbon_5,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,COX5B,DUF82,Rpr2,zf-BED,zinc_ribbon_4,DUF1610,CxxC_CxxC_SSSS,zf-LYAR,Med27
A7MAY2 Nearest Neighbor (50–70%) 53.6% zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,zf-DNL,zf-C2H2_jaz,XPA_N,zf-H2C2_2,Yippee,C1_4,TFIIS_C,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,Prok-RING_1,DUF2688,KRAB,ZZ,GATA,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,CpXC,Ribosomal_L44
C9J6L6 Nearest Neighbor (50–70%) 53.6% zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,zf-DNL,zf-C2H2_jaz,XPA_N,zf-met,zf-H2C2_2,Yippee,C1_4,TFIIS_C,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,C1_2,Prok-RING_1,DUF2688,KRAB,ZZ,GATA,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,CpXC,Ribosomal_L44
O75261 Nearest Neighbor (50–70%) 53.6% zf-C2H2_4,C1_4,zf-C2H2,Prok-RING_1,zf-BED,zf-C2H2_jaz,KRAB,zf-met,zf-met2,zf-H2C2_2,CxxC_CxxC_SSSS,HTH_Tnp_ISL3,XPA_N,Zn_Tnp_IS1595,Yippee,zf-C2H2_6,BolA
Q8NCC0 Nearest Neighbor (50–70%) 53.6% zf-C2H2_4,zf-C2H2,NifU_N,Evr1_Alr,Prok-RING_2,C1_3,zf-C2H2_jaz,XPA_N,zf-H2C2_2,C1_4,TFIIS_C,HTH_Tnp_ISL3,Zn_Tnp_IS1595,DUF2321,zf-C2H2_6,Desulfoferrod_N,SprT-like,DNA_RNApol_7kD,zf-trcl,DUF1610,CxxC_CxxC_SSSS,DUF164,DUF406,Ribosomal_L44,ANATO,Rep_fac-A_C,BolA
Q6MZN6 Nearest Neighbor (50–70%) 53.4% zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,Evr1_Alr,UPF0547,Prok-RING_2,C1_3,zf-C2H2_jaz,YhfH,XPA_N,zf-met,zf-H2C2_2,C1_4,TFIIS_C,HNH,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,zinc_ribbon_2,Desulfoferrod_N,C1_2,Prok-RING_1,zf-HIT,ZZ,DUF1062,ADK_lid,DUF1163,SprT-like,LIM,DNA_RNApol_7kD,zf-trcl,DUF1610,CxxC_CxxC_SSSS,DUF164,zf-C2HC_2,CpXC,FYDLN_acid,Ribosomal_L44,Rep_fac-A_C,BolA
Q15930 Nearest Neighbor (50–70%) 52.3% zf-C2H2_4,C1_4,zf-C2H2,Desulfoferrod_N,TFIIS_C,zf-CSL,DNA_RNApol_7kD,zf-BED,zf-C2H2_jaz,zf-AN1,XPA_N,zf-H2C2_2,CxxC_CxxC_SSSS,DZR,zf-Mss51,zf-C2H2_6,A2L_zn_ribbon
A0A494C0U8 Nearest Neighbor (50–70%) 52.2% zf-C2H2_4,C1_4,zf-C2H2,zf-C2H2_jaz,zf-trcl,zf-AN1,KRAB,XPA_N,DUF4389,zf-H2C2_2,CxxC_CxxC_SSSS,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,Csm1
Q8N7M2 Nearest Neighbor (50–70%) 52.2% zf-C2H2_4,GVQW,C1_4,zf-C2H2,zf-C2H2_jaz,zf-trcl,zf-AN1,KRAB,XPA_N,DUF4389,zf-H2C2_2,CxxC_CxxC_SSSS,Zn_Tnp_IS1595,zf-C2H2_6,Csm1
K7EN48 Nearest Neighbor (50–70%) 51.9% zf-C2H2_4,zf-C2H2,Evr1_Alr,Prok-RING_2,zf-C2H2_jaz,zf-met,zf-H2C2_2,Yippee,A2L_zn_ribbon,C1_4,TFIIS_C,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,DUF1407,FYVE,Tnp_zf-ribbon_2,DNA_RNApol_7kD,zf-trcl,zinc_ribbon_4,CxxC_CxxC_SSSS,DUF164
B3KNB1 Nearest Neighbor (50–70%) 51.6% zf-C2H2_4,zf-C2H2,zf-C2H2_jaz,zf-met,XPA_N,zf-H2C2_2,C1_4,TFIIS_C,Raffinose_syn,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-C2H2_6,DUF3280,Ham1p_like,GATA,zf-BED,zf-trcl,CxxC_CxxC_SSSS,zf-LYAR
D6RC96 Nearest Neighbor (50–70%) 51.4% zf-C2H2_4,PyrI_C,zf-C2H2,zf-C2H2_jaz,zf-met,zf-H2C2_2,BTB
Q6RFR5 Nearest Neighbor (50–70%) 51.4% zf-C2H2_4,zf-C2H2,UPF0547,Evr1_Alr,C1_3,zf-C2H2_jaz,YhfH,IBD,XPA_N,zf-met,zf-H2C2_2,GAGA,C1_1,A2L_zn_ribbon,C1_4,zinc_ribbon_5,TFIIS_C,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-MYND,RRN7,zf-C2H2_6,Desulfoferrod_N,C1_2,Prok-RING_1,zf-HIT,COX5B,ZZ,DUF82,LIM,GATA,zf-BED,DNA_RNApol_7kD,zf-trcl,zinc_ribbon_4,CxxC_CxxC_SSSS,CpXC
Q96JS8 Nearest Neighbor (50–70%) 51.4% zf-C2H2_4,zf-C2H2,Zn_ribbon_recom,C1_3,zf-C2H2_jaz,XPA_N,zf-H2C2_2,Yippee,C1_1,C1_4,zf-RING_3,TFIIS_C,zf-AN1,RRN7,zf-C2H2_6,zf-UBP,COX5B,Siva,zf-H2C2_5,LIM,DUF3268,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,zf-C2HC_2,CpXC,zf-LYAR
O14888 Nearest Neighbor (50–70%) 51.3% zf-C2H2_4,C1_4,zf-C2H2,Desulfoferrod_N,TFIIS_C,FYVE,YhfH,zf-C2H2_jaz,zf-trcl,IBR,XPA_N,zf-H2C2_2,CxxC_CxxC_SSSS,zf-C2H2_6,LIM,BolA
F8VS19 Nearest Neighbor (50–70%) 51.0% zf-C2H2_4,Ribosomal_L37ae,zf-C2H2,Zn_ribbon_recom,Evr1_Alr,Prok-RING_2,zf-C2H2_jaz,Ogr_Delta,zf-met,XPA_N,zf-H2C2_2,Yippee,Fer4_10,C1_1,NinG,A2L_zn_ribbon,C1_4,TFIIS_C,zf-CHY,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,zf-MYND,zf-C2H2_6,C1_2,Desulfoferrod_N,TF_Zn_Ribbon,SprT-like,zf-BED,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,Fer4_7,CpXC
A0A8Q3SIR0 Nearest Neighbor (50–70%) 50.9% zf-C2H2_4,zf-C2H2,UPF0547,YhfH,zf-C2H2_jaz,XPA_N,zf-H2C2_2,C1_4,TFIIS_C,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,DUF2321,zf-C2H2_6,Prok-RING_1,COX5B,LIM,GATA,Rpr2,SCAN,DNA_RNApol_7kD,zf-trcl,zinc_ribbon_4,CxxC_CxxC_SSSS,CpXC
A0A8Q3SIT7 Nearest Neighbor (50–70%) 50.9% zf-C2H2_4,zf-C2H2,UPF0547,YhfH,zf-C2H2_jaz,XPA_N,zf-H2C2_2,C1_4,TFIIS_C,zinc_ribbon_5,zf-AN1,HTH_Tnp_ISL3,Zn_Tnp_IS1595,DUF2321,zf-C2H2_6,Prok-RING_1,LIM,GATA,Rpr2,SCAN,DNA_RNApol_7kD,zf-trcl,zinc_ribbon_4,CxxC_CxxC_SSSS,CpXC
Q9UNY5 Nearest Neighbor (50–70%) 50.9% zf-C2H2_4,zf-C2H2,UPF0547,YhfH,zf-C2H2_jaz,XPA_N,zf-H2C2_2,C1_4,TFIIS_C,zinc_ribbon_5,HTH_Tnp_ISL3,Zn_Tnp_IS1595,DUF2321,zf-C2H2_6,Prok-RING_1,LIM,GATA,Rpr2,SCAN,DNA_RNApol_7kD,zf-trcl,CxxC_CxxC_SSSS,CpXC
Q9NSJ1 Nearest Neighbor (50–70%) 50.4% zf-C2H2_4,C1_4,zf-C2H2,C1_3,zf-C2H2_jaz,zf-H2C2_2,CxxC_CxxC_SSSS,Zn_Tnp_IS1595,DUF164,zf-C2H2_6
O14887 Nearest Neighbor (50–70%) 50.0% zf-C2H2_4,zf-C2H2,YhfH,zf-C2H2_jaz,zf-met,XPA_N,zf-H2C2_2,Fer4_10,C1_4,TFIIS_C,zf-AN1,zf-C2H2_6,Fer4_2,FYVE,Fer4,ADK_lid,LIM,zf-trcl,IBR,DUF1610,Fer4_4,CxxC_CxxC_SSSS,DUF164,BolA